Detail information of Zm00001d046377_circ_ig.5


General Information
CircRNA Name Zm00001d046377_circ_ig.5
ID in PlantcircBase zma_circ_005888
Alias leafctrl_test_circ_000050
Organism Zea mays
Position chr9: 85536387-85536635  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d046377_circ_ig.1 Zm00001d046377_circ_ig.2 Zm00001d046377_circ_ig.3 Zm00001d046377_circ_ig.4 Zm00001d046377_circ_ig.6 Zm00001d046377_circ_ig.7 Zm00001d046377_circ_ig.8
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAACAAGAAATCTAACTTTTATCATGGAAGATATATGTGTTCCAGCAAGTACTCTGATTGTT
TCTCCTTAGGTTCTTCAGATCTATACAGTCTTCCTCcctcgctgtcagcttgccggccagcatc
aatagcttcattggtgccgtatagtcccaatagtttatgaaacgacggctttttatgcatggta
gtccaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGCTGTCAGCTTGCCGGCCAGCATCAATAGCTTCATTGGTGCCGTATAGTCCCAATAGTTT
ATGAAACGACGGCTTTTTATGCATGGTAGTCCAATAGATATGTTCTAATAAGACGGGAAGAACA
TATGGAACCCATGCATGAGCACCAAACAAGAAATCTAACTTTTATCATGGAAGATATATGTGTT
CCAGCAAGTACTCTGATTGTTTCTCCTTAGGTTCTTCAGATCTATACAGTCTTCCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.359871288
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018