Detail information of Os10g0362300_circ_g.7


General Information
CircRNA Name Os10g0362300_circ_g.7
ID in PlantcircBase osa_circ_006592
Alias NA
Organism Oryza sativa
Position chr10: 11198747-11201058  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0362300
Parent gene annotation Similar to Histidine kinase 3. (Os10t0362300-01);Similar to Hist
idine kinase. (Os10t0362300-02);Histidine kinase, Cytokinin sign
aling (Os10t0362300-03);Histidine kinase, Cytokinin signaling (O
s10t0362300-04)
Parent gene strand -
Alternative splicing Os10g0362300_circ_g.8 Os10g0362300_circ_g.9
Support reads 1
Tissues shoot, root, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0362300-01:3
Os10t0362300-02:1
Os10t0362300-03:3
Os10t0362300-04:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCAGATGGTTTATTCTTAAGACGACAATTTGACATATCAGGCATGCTGTGGGCTGGATTATC
ATCATTGATCGTACCAGATTTACATATGCATTCCCGcttcccagacatcatgtcaactgatata
atgtgctttacagtttcctgggagaaaataacaggtgcatactcatcttgaactggtgaaggct
gaagcttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 924
Transcript exons: 11198747-11199022,11199480-11199887,11200819-11201058
CTTCCCAGACATCATGTCAACTGATATAATGTGCTTTACAGTTTCCTGGGAGAAAATAACAGGT
GCATACTCATCTTGAACTGGTGAAGGCTGAAGCTTTTCAGGATTGTAGTCATGAACAAGGGATT
GATCTTCGGTCTCCATTTTCTTAATCTTCCATCCAAGCTTTTGCTCAAACAACTCCCTTTCGCT
GTGCAGCACCTTCAAAGCATAGGCAACACCACTCATCAATGGCCTTTCAAATGTTGTCCTAGCC
GTGAAATCCTCAAATGTTTTCTGATCAATAGCAGAAGGATTCTTCCCATGGTGAAAAGTTGAGA
CTAAAATAGCCAATGCATGCACATGGTTCATGCTTACATTGAACTGATCTTGTAGCATCCTAGC
TCTCTCATCACACATATTTTCAAGATTCTCAATTCTTCTAGCAACAACATCAGCATGCATGCTT
GAAAATATCCAGACAGAACTACAAAGCCCAACTAAGACACCAAGAAGCAGGGCTCTCTTTGACC
ATTTTCGACTTATCTTAACACTCGGTGTCTGGAGGAGTTTCTCATGCTGACACAGTTCATTTGC
TTGCTTCCCTCTTTTGAAAATAGTTATAACTACCAAAATTACAACTATTCCAAGGGAAGCAGAC
AAACTAAATATCATCCCGTGATTGAAGCTCAAGGCGTTATTCTGATTCCACAATGTCGTAGGAG
AGCCAATGTCTTGTTGCATGGCATTTTGCAATAAATTGTTTTCATGATTATTTTTGTCATAATT
ATCTTCATTTGCGCAACAATCTTGAATAATCACATTGTCCAGCCTGTTTTGATTTCCTCCAGAT
GGTTTATTCTTAAGACGACAATTTGACATATCAGGCATGCTGTGGGCTGGATTATCATCATTGA
TCGTACCAGATTTACATATGCATTCCCG

Genomic sequence CTTCCCAGACATCATGTCAACTGATATAATGTGCTTTACAGTTTCCTGGGAGAAAATAACAGGT
GCATACTCATCTTGAACTGGTGAAGGCTGAAGCTTTTCAGGATTGTAGTCATGAACAAGGGATT
GATCTTCGGTCTCCATTTTCTTAATCTTCCATCCAAGCTTTTGCTCAAACAACTCCCTTTCGCT
GTGCAGCACCTTCAAAGCATAGGCAACACCACTCATCAATGGCCTTTCAAATGTTGTCCTAGCC
GTGAAATCCTCAAATGTTTTCTGTCAAATGTCAATGATAACAAGATCTCATAATCTTGAAAAAA
TGCACAGTATTAATAGGATAGAAAATAACAAGATGTTTTCTTTTAAATAACATAAATCTTTGAA
AAACTGTGCATCCCCTCCTGGCCTCCTGTTTCAGCTATAATGATGTTTTTTTCCCAGTGACTTA
TCATGGTATAAGCAGTTTTGAATGGAGACACCTATTCTAAACATTTTTCTTTGGACAAACAAAT
TGCTAATGGCTAATCAGATTTTATACTCCTTCCAGTCAGTCACAAAAACATACCATTTTGATCA
CACGGCCTTCAAAATACAACTTTCACAGCTAATTTCTTTTACAATGCATTTTTAGAAACCTGAT
TAAATTATTAAATTATCAAAAAAATTTTAATAATATTAAAAGTTTGTTGAATCACCCTTGCAAT
TAAGAAAGATGTATCCAAAGAAAGCAAACCTGATCAATAGCAGAAGGATTCTTCCCATGGTGAA
AAGTTGAGACTAAAATAGCCAATGCATGCACATGGTTCATGCTTACATTGAACTGATCTTGTAG
CATCCTAGCTCTCTCATCACACATATTTTCAAGATTCTCAATTCTTCTAGCAACAACATCAGCA
TGCATGCTTGAAAATATCCAGACAGAACTACAAAGCCCAACTAAGACACCAAGAAGCAGGGCTC
TCTTTGACCATTTTCGACTTATCTTAACACTCGGTGTCTGGAGGAGTTTCTCATGCTGACACAG
TTCATTTGCTTGCTTCCCTCTTTTGAAAATAGTTATAACTACCAAAATTACAACTATTCCAAGG
GAAGCAGACAAACTAAATATCATCCCGTGATTGAAGCTCAAGGCGTTATTCTGCTGTACATTCA
GCCCATTAATGACAATACACAAGTCACATAGGCATAGCTAAATATATTGAAAACGAAAAGGTAC
AATCAATAGGAATTTGTAATGGTTAAAGATCAACATGCTATGAATCATGACATTGTAAGTCAAG
AAAATAGATAATCACAATACAAACCAAAAATGGCATTAGAAACATGGAGAAGGTGCTTCTCTTT
AATAAATGAAATGTCAAAAACAGTTGCAGAAAAAAAAAGGATAATTAACTCTGATTAGGCAATA
CAAAACTGTGAAATTAATAGCATTATTTGATACAAGAAGATTCCGTAGGAAGTTATTTCTTAAG
AGATGTAAATATAGTTTTTTTTTCTACTTTAGCCTCATTTAAGCTCAATTTAACATGTTCTGCA
AAGGAATCAACACACCTGAGTTATTGGCATTTGACAATTGGCAGGGCAAAAGGACAGCTCTGTA
ATTTCTTCAAGAAAAAGCTCGACTTAAGCATGACTTTGAGTTATTGGAATCAAGTTGGACGTAT
AATAGTATGGCTAGCAAGTCCTACAGTACTATGTGGCAGTAAGACTGACGAGACCTATTGTTGT
TCTAGTTAAGATAGCTCGGTGGCTACATACTAATTGGACAATGCCAAGATAGATGCCAATCCCC
ATTACATCAAAGTAGCAGAAAATAAATCCAACCTAACATATAGATATGCCAATATCATGCAATC
CTCTGAAGTATTTAGAGTCAAGTAGACAATCTGGTTAGTAGGTCACAAGAGTTGAAGGTTCAGA
TCATTCATGAATCAGCCACATTAACAATATGTTATAATACAGTCCAATTCCATTAATGCTCTAT
ATTCCAAGTTTACAGTGCAAAAAGAAATGTAGCTAATTTGACACTTCACCAAGTTCATCCAGGA
TAAAGAGAAACATAAAACACTCACATTCCACAATGTCGTAGGAGAGCCAATGTCTTGTTGCATG
GCATTTTGCAATAAATTGTTTTCATGATTATTTTTGTCATAATTATCTTCATTTGCGCAACAAT
CTTGAATAATCACATTGTCCAGCCTGTTTTGATTTCCTCCAGATGGTTTATTCTTAAGACGACA
ATTTGACATATCAGGCATGCTGTGGGCTGGATTATCATCATTGATCGTACCAGATTTACATATG
CATTCCCG
Conservation Information
Conserved circRNAs osi_circ_002782* osi_circ_008881
PMCS 0.332931106
Functional Information
Coding potential Y
Potential coding position 11201004-11198822(+)
11201006-11198749(-)
Potential amino acid sequence MLWAGLSSLIVPDLHMHSRFPDIMSTDIMCFTVSWEKITGAYSS*(+)
MPDMSNCRLKNKPSGGNQNRLDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQN
NALSFNHGMIFSLSASLGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLG
VLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKN
PSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNP
EKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNK
PSGGNQNRLDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFS
LSASLGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIF
SSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDF
TARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEY
APVIFSQETVKHIISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNRLDNV
IIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSASLGIVVILV
VITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRI
ENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMS
GVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKH
IISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNRLDNVIIQDCCANEDNY
DKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSASLGIVVILVVITIFKRGKQAN
ELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERAR
MLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSE
RELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGK(-
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017