Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0362300_circ_g.7 |
ID in PlantcircBase | osa_circ_006592 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 11198747-11201058 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0362300 |
Parent gene annotation |
Similar to Histidine kinase 3. (Os10t0362300-01);Similar to Hist idine kinase. (Os10t0362300-02);Histidine kinase, Cytokinin sign aling (Os10t0362300-03);Histidine kinase, Cytokinin signaling (O s10t0362300-04) |
Parent gene strand | - |
Alternative splicing | Os10g0362300_circ_g.8 Os10g0362300_circ_g.9 |
Support reads | 1 |
Tissues | shoot, root, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0362300-01:3 Os10t0362300-02:1 Os10t0362300-03:3 Os10t0362300-04:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002782* osi_circ_008881 |
PMCS | 0.332931106 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11201004-11198822(+) 11201006-11198749(-) |
Potential amino acid sequence |
MLWAGLSSLIVPDLHMHSRFPDIMSTDIMCFTVSWEKITGAYSS*(+) MPDMSNCRLKNKPSGGNQNRLDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQN NALSFNHGMIFSLSASLGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLG VLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKN PSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNP EKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNK PSGGNQNRLDNVIIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFS LSASLGIVVILVVITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIF SSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDF TARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEY APVIFSQETVKHIISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNRLDNV IIQDCCANEDNYDKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSASLGIVVILV VITIFKRGKQANELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRI ENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMS GVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKH IISVDMMSGKRECICKSGTINDDNPAHSMPDMSNCRLKNKPSGGNQNRLDNVIIQDCCANEDNY DKNNHENNLLQNAMQQDIGSPTTLWNQNNALSFNHGMIFSLSASLGIVVILVVITIFKRGKQAN ELCQHEKLLQTPSVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERAR MLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSE RELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGK(- ) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |