Detail information of AT1G66970_circ_g.2


General Information
CircRNA Name AT1G66970_circ_g.2
ID in PlantcircBase ath_circ_008959
Alias At_ciR4176
Organism Arabidpsis thaliana
Position chr1: 24992817-24992930  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G66970
Parent gene annotation SHV3-like 2
Parent gene strand -
Alternative splicing AT1G66970_circ_g.1
Support reads 4
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G66970.2:1
AT1G66970.1:1
AT1G66970.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGAGATAGTGGTGGCTCAGTGACATCAGCCTCTATGAAATCCTGGTTTGGAGCTTgtgcttg
agcaatggttgagggagttccaggggttgaggttggagcttttgctataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTTGAGCAATGGTTGAGGGAGTTCCAGGGGTTGAGGTTGGAGCTTTTGCTATAACCGGAGA
TAGTGGTGGCTCAGTGACATCAGCCTCTATGAAATCCTGGTTTGGAGCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.171053217
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015