Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os09g0440300_circ_g.1 |
ID in PlantcircBase | osa_circ_039348 |
Alias | NA |
Organism | Oryza sativa |
Position | chr9: 16332791-16332940 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, circRNA_finder |
Parent gene | Os09g0440300 |
Parent gene annotation |
Aldehyde dehydrogenase, Seed maturation, Maintenance of viabilit y during storage, Lysine catabolism (Os09t0440300-01);Similar to Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiqui tin 1) (Matured fruit 60 kDa protein) (MF-60). (Os09t0440300-02) ;Similar to Aldehyde dehydrogenase. (Os09t0440300-03) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os09t0440300-01:1 Os09t0440300-02:1 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008083* |
PMCS | 0.413339333 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
16332935-16332937(+) 16332809-16332793(-) |
Potential amino acid sequence |
MRPSGPPHVLLPRITPCFSSTTSSFFSTKSSTNFSTICGNIYINNATVTTMRPSGPPHVLLPRI TPCFSSTTSSFFSTKSSTNFSTICGNIYINNATVTTMRPSGPPHVLLPRITPCFSSTTSSFFST KSSTNFSTICGNIYINNATVTTMR(+) MRRATWPHGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATWPHGSDCGI VNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATWPHGSDCGIVNVNIPTNGAEIGG AFGGEKATGGGREAGSDSWKQYMRRAT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |