Detail information of Os09g0440300_circ_g.1


General Information
CircRNA Name Os09g0440300_circ_g.1
ID in PlantcircBase osa_circ_039348
Alias NA
Organism Oryza sativa
Position chr9: 16332791-16332940  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, circRNA_finder
Parent gene Os09g0440300
Parent gene annotation Aldehyde dehydrogenase, Seed maturation, Maintenance of viabilit
y during storage, Lysine catabolism (Os09t0440300-01);Similar to
Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiqui
tin 1) (Matured fruit 60 kDa protein) (MF-60). (Os09t0440300-02)
;Similar to Aldehyde dehydrogenase. (Os09t0440300-03)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os09t0440300-01:1
Os09t0440300-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAAAGCTCCACCAATTTCAGCACCATTTGTGGGAATATTTACATTAACAATGCCACAGTCAC
TACCATGAGGCcaagtggccctcctcatgtactgcttccacgaatcactccctgcttctcgtcc
accaccagtagctttttctcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTGGCCCTCCTCATGTACTGCTTCCACGAATCACTCCCTGCTTCTCGTCCACCACCAGTAG
CTTTTTCTCCACCAAAAGCTCCACCAATTTCAGCACCATTTGTGGGAATATTTACATTAACAAT
GCCACAGTCACTACCATGAGGC
Conservation Information
Conserved circRNAs osi_circ_008083*
PMCS 0.413339333
Functional Information
Coding potential Y
Potential coding position 16332935-16332937(+)
16332809-16332793(-)
Potential amino acid sequence MRPSGPPHVLLPRITPCFSSTTSSFFSTKSSTNFSTICGNIYINNATVTTMRPSGPPHVLLPRI
TPCFSSTTSSFFSTKSSTNFSTICGNIYINNATVTTMRPSGPPHVLLPRITPCFSSTTSSFFST
KSSTNFSTICGNIYINNATVTTMR(+)
MRRATWPHGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATWPHGSDCGI
VNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATWPHGSDCGIVNVNIPTNGAEIGG
AFGGEKATGGGREAGSDSWKQYMRRAT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017