Detail information of Zm00001d037606_circ_g.1


General Information
CircRNA Name Zm00001d037606_circ_g.1
ID in PlantcircBase zma_circ_005251
Alias Rdr_test_circ_001138
Organism Zea mays
Position chr6: 131471735-131472135  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d037606
Parent gene annotation Importin subunit alpha
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d037606_T011:2
Zm00001d037606_T012:2
Zm00001d037606_T009:2
Zm00001d037606_T007:2
Zm00001d037606_T005:1
Zm00001d037606_T004:2
Zm00001d037606_T013:2
Zm00001d037606_T002:2
Zm00001d037606_T010:2
Zm00001d037606_T001:2
Zm00001d037606_T006:2
Zm00001d037606_T008:2
Zm00001d037606_T003:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAATAGAACTTTAAGCACACAAACCTGAATCTGTTCCCTGTTACCAGCTGTGATGTTTGAGAT
TGTCCAGCATGCTTCTTTCTTGATGCTTTTCTTGTGgcagtttgcagaagttgcaccagaggtg
caattatgtttgcattaatcacggcctgcagccatatgaaaagtaatttaggaagaaaccaaac
agaatggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGTTTGCAGAAGTTGCACCAGAGGTGCAATTATGTTTGCATTAATCACGGCCTGCAGCCATA
TGAAAAGTAATTTAGGAAGAAACCAAACAGAATGGTGGAGTTGAATAAGAAGCCAACCAAACAG
AGTGGAGTTGAATAAGAAAAACCAACAGGTGATATCATTGAAGTTACTGGGACTATGGGAGAAA
ATGTTCGTTTACTGAAATGAATTTCAAGTCACACATCAACCCTTCTTTGAAGAAATGGCATATG
CTTAATCAAATCAAATATGCACATGATTATGGAGGACTTGATTCATCAATAGAACTTTAAGCAC
ACAAACCTGAATCTGTTCCCTGTTACCAGCTGTGATGTTTGAGATTGTCCAGCATGCTTCTTTC
TTGATGCTTTTCTTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.210972465
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018