Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d018812_circ_g.2 |
ID in PlantcircBase | zma_circ_009209 |
Alias | zma_circ_0002732, GRMZM2G011314_C1 |
Organism | Zea mays |
Position | chr7: 5874843-5875143 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d018812 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d018812_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018812_T001:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.216144611 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5874859-5874844(+) 5875091-5874844(+) 5874907-5874882(-) 5874861-5874882(-) |
Potential amino acid sequence |
MQGLRDEIRARLEGKHHSLCPGGVCDLGNARSELSILPLSCRIVAVVNAQRVLLVPHALGYRQE VP*(+) MLSGFCSYPTLSGTVKRCHKGADMQGLRDEIRARLEGKHHSLCPGGVCDLGNARSELSILPLSC RIVAVVNAQRVLLVPHALGYRQEVP*(+) MFTFQPGSDLIAKPLHVSPFMAPLDGTRERGVRAEPAEHLLLLRFCRTGARWRAQNVHCRGHKH PLGRESDVYLPTGL*(-) MSAPLWHLLTVPESVGYEQNPLSIYYCYDSAGQGQDGELRTCIAEVTNTPWAERVMFTFQPGSD LIAKPLHVSPFMAPLDGTRERGVRAEPAEHLLLLRFCRTGARWRAQNVHCRGHKHPLGRESDVY LPTGL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Ma et al., 2021b;Zhang et al., 2019 |