Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08930_circ_g.11 |
ID in PlantcircBase | ath_circ_001511 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2875210-2875867 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G08930 |
Parent gene annotation |
ERD6 |
Parent gene strand | + |
Alternative splicing | AT1G08930_circ_g.9 AT1G08930_circ_g.10 |
Support reads | 10 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08930.1:4 AT1G08930.2:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.158675114 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2875427-2875864(+) |
Potential amino acid sequence |
MTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIAT IMAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVG LMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIMAKLGRDKECRSSLQRLRGSDVDISR EANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFNKGGFP SAIGTSVIATIMAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRR YAYPLIIGVGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIM(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |