Detail information of Os01g0848300_circ_g.2


General Information
CircRNA Name Os01g0848300_circ_g.2
ID in PlantcircBase osa_circ_040702
Alias NA
Organism Oryza sativa
Position chr1: 36439780-36440303  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRI-long
Parent gene Os01g0848200
Parent gene annotation Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [In
cludes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)
(GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (G
lutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdeh
yde dehydrogenase)]. (Os01t0848200-01);Similar to Delta 1-pyrrol
ine-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinas
e (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl pho
sphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde d
ehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)]. (Os0
1t0848200-02)
Parent gene strand +
Alternative splicing Os01g0848300_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0848300-01:2
Os01t0848200-01:1
Os01t0848200-02:1
Os01t0848300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCTGGTGTAGGGCGGTCTGCTGCTGAAGCCGGAGACATGCACATCGCAGAAGCCTAATCATC
AGACTGGAGCCTCAACTGAACCATCCCGTATCTGATcttcaacatctctggtttcaggtgaagt
ggcttgtgaaggagctgttgtagagcaattttttgcagacgctcaccgtgctcctccttgagag
ctgcttct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 239
Transcript exons: 36439780-36439879,36440165-36440303
CTTCAACATCTCTGGTTTCAGGTGAAGTGGCTTGTGAAGGAGCTGTTGTAGAGCAATTTTTTGC
AGACGCTCACCGTGCTCCTCCTTGAGAGCTGCTTCTCTGAGCGTGGCGACGCTGGTGCTTTCCA
TGATAAAGATCTGGCTGGTGTAGGGCGGTCTGCTGCTGAAGCCGGAGACATGCACATCGCAGAA
GCCTAATCATCAGACTGGAGCCTCAACTGAACCATCCCGTATCTGAT

Genomic sequence CTTCAACATCTCTGGTTTCAGGTGAAGTGGCTTGTGAAGGAGCTGTTGTAGAGCAATTTTTTGC
AGACGCTCACCGTGCTCCTCCTTGAGAGCTGCTTCTCTTCATGACATGCAATGGGAGCACGAAA
GCATGTCAAAGCAGGAAGTAATGAAGGGCGAAGTAGGTCAGAAACTTATAGTACTATGTACTAT
GGTGTTGCTACGTAGTTGTGTGGTATTCCTTATTATTCATTGTACCATGAATAATTTATGCCAA
TGTCGTAGTAGCTACATGTAACTATATTGGCTTTCATGGACACGTCTATGGTACTAGATGTAAA
ACTGCTAGATGGCTTTAGATGAACATCTCAGATTTATTTTCCATAGAATGCACATATGAAAGTA
CCTGAGCGTGGCGACGCTGGTGCTTTCCATGATAAAGATCTGGCTGGTGTAGGGCGGTCTGCTG
CTGAAGCCGGAGACATGCACATCGCAGAAGCCTAATCATCAGACTGGAGCCTCAACTGAACCAT
CCCGTATCTGAT
Conservation Information
Conserved circRNAs osi_circ_002539* osi_circ_010926
PMCS 0.216552163
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study