Detail information of Csa4G106860_circ_g.1


General Information
CircRNA Name Csa4G106860_circ_g.1
ID in PlantcircBase csa_circ_002454
Alias Chr4:6787540_6791517
Organism Cucumis sativus
Position chrChr4: 6787540-6791517  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method Find_circ
Parent gene Csa4G106860
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa4G106860.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTCCAAGTACTATAAAAAACTCTTTGAGAGAGATCATTTGTCCACGAATCTTGCTGGGGGA
AGTTTCAGCAATATACATTGGCGCTGCATGCATTGCctttagtggagaaaaggcaaatgtcact
agagcatttgctccaaaattcacaagcactgctatactgagccctcgacctctcagccgcaatg
gaaaaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAGTGGAGAAAAGGCAAATGTCACTAGAGCATTTGCTCCAAAATTCACAAGCACTGCTATA
CTGAGCCCTCGACCTCTCAGCCGCAATGGAAAAACCTCAGAAATCATTAACCAACCAATGGGAC
CAAAAGACAACTGCAAAACAAAGTTTACTTAGTTGAACTCAAACTCCTATGTTTAGAGAAGGAG
AACTTATTAAACAACGGTCATTCAGAATCTTATGTATCCATGCAATAAAACATTTATCTGCAGT
TTGAACAAACCTCATTTGAGCAGCGTTTATGCAAAGAATAGAACATTTGCTTATATTTTGGTCC
TTATCTAAGTGTAAACTATTTTGGGATGCTACCATTGAAACAAAGGTTGAATATAGCAATGTTT
CCACATGCTTCCGGAGTGGCATATCCAAAACTTTAGGCTATTGGGGGGACAATTTCATATAAGA
CTAAAACTTAGCCCATAAAACTCTCCCATATGATTAGCAATATCTGTTATTTCTTTTTATTTTA
TTTAAATAAAAAAATAATTTAACATATGTTAGTGACTGACTCATGGCCATGGGATAATAAAGGG
ATAGCTCCGTAATCAACGAAATGTTTCTTATCCAAAAGAACAAACTTGCAAATATATACATTAC
AAAAACAAGTGAGTTCAACCACAATTACAAGGGAAAAAGAACTCATAGCATCCTCATCACATCC
CAATAAAAAACAACACTAAAATCAGAGACAGAGTACTATATGTCATGATTACATTGCATGCATG
AAAGCATTCCAGTTAAGATACACATCTTGAACTGAATAATCTGAAAATAATTTGGAAAAAGAGC
ACCAAAAGGAAGCTTTGACTAGCAATATCAAAAATGGTCAAACCATTGAAGTGACTTGTCTTGG
AAGATGTGTTGGTTTCTTTCCGACCAAATCTCTGAGAGAATAGCTGAACATTAGTTTTTTTTCT
CTTGTTTAAAGTTAAAACAAAAAAATATCGGTTAATTTTTTACTTTAGTTATTAGTATTGATTG
TATACCCTTTATGAAATCCCGACTTTGTCTATTCGGAAGGAGTTGCTTTATCTCCTTGCCTCTT
CTTGTATCACCCTGTTTATCTTTTATCTAATTAAATTATTTTCTCTTACTAAGAAAACTTATTG
TCCTTTATTAAAGAACTACAAGAAAAATATGTTTGGAGAGTTTTCATTTGGTCATTTTTTTCAA
AACATTATACTTTTACCTCTAAACTTTGATTTTAATTTCCGTTTAGTTCCTAGGTTTTACAATA
TTACCCTTTTACCCTTCAGCTTTAAGTTTTGTTTCTATCATTTGGTTCTTAGCCTTAAAGGTTT
GCACTTTTACCCTTGACGTTATCATTAAGTTTTGAGTTTTGCTTCTTTCATTTGGTCCTTAGGT
CTCAACCCTTGATTTTCTTTTCTCTAAATACTCCTTTGAGTCCTTTGTGTTAATGTTTATAAAT
TTATTTAAAAGAATCAAATTAGTTTTCATGAATTTTTCATCACCACTAAAAATAATGAAGAACT
TCACATAATAATTATTTGAAATTGATTAACGAAAAAGACCGAAGTGAGTGTAAGTGAAAATTAG
TGGTAAAAATGTAAAATATTCAAAACTAGCATCTAGGAGAGCTAAACTCAAAATGCAAGGATGA
AAATGTAATCTTTTTCAACTTAGAATCTAGGAACCAAACAAAAATTAAACTCAAAATTGGTATA
AAGTTGTAATGTACTAGAACTTAGGGTCCAAATGAAAATTATGCTCAAAATCCTGGTACCAAAA
GGAATTTTTCCCAAAAGGCAAAAACTAAATTTAAATCACTAGACAACACCGTCGGCCCATCAAA
CATAAGAAAACAAAAGAATTGTAGAAACCAGCACAGCAGGGCATAACTAGAGCATATTGTCAAG
CCGTATACATGAGAAAACAAAAGAAAAATCTGAAATACCTGGTAACTACCAACATATAGCAAGA
GCGCAACTACAGCAACAGCAGGCACATTACCCAGGAAAAGGTAATAGGATCCCAAGAGGAACAA
AGAAATCGTCTGTCACATGAATACAGTGTATAAATAAAAGAACAGGATAATGATCTTTTGAAGT
CAGATGCATTTTTTTTAAAAGAGCTGTTAACTATTTGTACTTCAAAACAATTGTTATGCTATGA
CAGTAGAATTGACGTCGGAAAGACAAGGAAAAGAACAAAATAGTAGAACTATAATTGGTAGTAT
TTTGTGTACAGGGTGATGGTGCCCCATGGCCGCTTATGTTCAAAAGTTTGGATGAAAAAAATCC
AAGGAATTTACAAATTGGACTTACAATCCCAGATACACCTCCAAGGAGTAAAGGCCTCCTCCCA
AGTCTATCAACAACAAGAACAGCTGCTCCAGTCATTATTAGCTGCAGTATTAGAAAAATTAGTT
CAAAACTTCATGAGATGATCATATGGAAACATGTATTCAAGTATTAGGATGAAGAAACTAGGAG
AGAACGGAAGCATTTATTCAGCTTAGCAAGACAATTGGACAACACATGCAAACTAGAACTGGAA
TTACAAGCTAATTCTCATTTCACAGAACTTGTAGGAGTTTGTATTTAAGACAGATTTATGGGCA
TATCTATGTAACAAATACCTTCAACAAACCAAGTAAAATTGACACCCGGGTCGCATCTGCAGCT
GCAGAGAATCCTGCACTCTATCGAATTATGTGACATTAGGAAAAAGACATGTTAAATTAGCCGA
AAGGAGTAAGACTTATGTAAGCTTCCCGATAACATTTGCTTCGTTGTCCTCTTGATCGTCTAGT
TTTTTTGTTCCATTCCTTCTCTATTAGAGGAAATCGCATTCCCGTTCCCTCTTATATGATTTAC
AAAATATGCTTTGTTGCTTTTAATATATAAGTAATAAAAAATATATTTACAGAAAAAGAGAGTA
GAGGACAGATACACAGATTTGCCAAATACAGCATTAGAAATTTAGAACTAGCTTGAGGGAGCAT
AATATAGCACAGATACGCAGGTACCTGAAAGATTGAGGGAGCATAATATAGCACACTTGGTTGA
CCAGTTATCTGCCAATAGTTGATGCCAATTCCAAATATAAGCAAACGATAAACAAATTCTGTGC
TTGAAAACGCTGTACAAATATATAAGATACCTGTTGAAATAATACTAATCCTGCGCCAATAATT
AGGGCCTTCAGGCACTTTCCCTGAAATATTTCCCCTATTGAGGCCTCCTCTGATTCACCAAGAA
AAGAGAGCTCTTCCAAAATTTCATTCACTTCTTCAGAAGCTGTCTCACCAATAACTGCACCCCT
TAGCCGATGCAAGCAGCTTATAGCCCGCTCTTTCAAGTCCGCCATATTTCCTTTTCTCTGTATG
GCACATAAAAGTAGCCACCTGGGAGATGATGGTAGCCACCACATTCCCACTCCCATGACCAACG
CAATTGGAGTATTGGCTGCATAAATGTAGCGCCAACCGGCAACCACTTCAACTAAAAGACTACC
AATGCTGTAACCCAACTGCAGAGCATCGTTCCATCAATTGCACATTTAGAATGATATACTGAAA
TTTTGAAATACAGCAGACAAGATAGAGAAGCCAAAAAAATAAATCCAATACAGATATTTTGACC
AGCTATGAGGGCCCTCCAATAGTCAGTCCTTACATTAGGTTATGAAAAGGGATCTACATATTGG
CATGTGATATATTTGAAATATGCTGGATTTTGAAATAGACCTGCTTTCTACGGAAGATACCATA
CATCTTCATTAGATGGATTCACCAGATTAAGAAAAGAAAGCAGAATGAAAGAAACTTATATTAA
AGTAATAAAAAAACAGGATAAGATAGAACCACTTACAACCATTCCAAGTACTATAAAAAACTCT
TTGAGAGAGATCATTTGTCCACGAATCTTGCTGGGGGAAGTTTCAGCAATATACATTGGCGCTG
CATGCATTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.097140661
Functional Information
Coding potential Y
Potential coding position 6791516-6787542(-)
Potential amino acid sequence MHAAPMYIAETSPSKIRGQMISLKEFFIVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMG
VGMWWLPSSPRWLLLCAIQRKGNMADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGES
EEASIGEIFQGKCLKALIIGAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLL
KLIMTGAAVLVVDRLGRRPLLLGGVSGITISLFLLGSYYLFLGNVPAVAVVALLLYVGSYQLSF
GPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVTFAFSPLKAMHAAPMYIAETSPSKIRGQM
ISLKEFFIVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQR
KGNMADLKERAISCLHRLRGAVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALIIG
AGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSILLGLLKLIMTGAAVLVVDRLGRRPL
LLGGVSGITISLFLLGSYYLFLGNVPAVAVVALLLYVGSYQLSFGPIGWLMISEVFPLRLRGRG
LSIAVLVNFGANALVTFAFSPLKAMHAAPMYIAETSPSKIRGQMISLKEFFIVLGMVLGYSIGS
LLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQRKGNMADLKERAISCLHRLRG
AVIGETASEEVNEILEELSFLGESEEASIGEIFQGKCLKALIIGAGLVLFQQITGQPSVLYYAP
SIFQSAGFSAAADATRVSILLGLLKLIMTGAAVLVVDRLGRRPLLLGGVSGITISLFLLGSYYL
FLGNVPAVAVVALLLYVGSYQLSFGPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVTFAFS
PLKAMHAAPMYIAETSPSKIRGQMISLKEFFIVLGMVLGYSIGSLLVEVVAGWRYIYAANTPIA
LVMGVGMWWLPSSPRWLLLCAIQRKGNMADLKERAISCLHRLRGAVIGETASEEVNEILEELSF
LGESEEASIGEIFQGKCLKALIIGAGLVLFQQITGQPSVLYYAPSIFQSAGFSAAADATRVSIL
LGLLKLIMTGAAVLVVDRLGRRPLLLGGVSGITISLFLLGSYYLFLGNVPAVAVVALLLYVGSY
QLSFGPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVTFAFSPLK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020