Detail information of BGIOSGA033253_circ_g.1


General Information
CircRNA Name BGIOSGA033253_circ_g.1
ID in PlantcircBase osi_circ_008594
Alias Chr10:21382198_21383046(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18494610-18495458  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033253
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA033253-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCATTTGCAATGCGCTTTTGTAACTAAAGGAATTGTTCCTTTTCAGAGCCCTGAGCTAAGA
CGATATCGAGAGCAAGTCCAGGTCCTAGAGAGCAGGggtagagtcagcaatacatggtgtctcc
ggaggtgctgtgataaaaggtcaggaagcaatggccattgttagcctgatgctctttgttgaat
ccttgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGAGTCAGCAATACATGGTGTCTCCGGAGGTGCTGTGATAAAAGGTCAGGAAGCAATGGCC
ATTGTTAGCCTGATGCTCTTTGTTGAATCCTTGCAAGTAACTATCAAAGCTGCTATGAAGCAAG
ACGAGGACTCACATGAACGATTAATCAGTCTTACAGAAACGGTTTTTCTCTATCTTCCTTTCTT
ATTGTCATCTATCGTAAACTATTCATGCCAGTGCAGTGTTCTGAATTCTTCTTCTCACCTGCAG
ATACTAGATGCTGACATTAATAAGTCATTGGTGAAATCAATACAAGATGTAATAGATGACGATG
GCTCCATAAAAGACACTGCAGTTTGGTCCTTGCACCTTGATTCTACTTTTTTGTTGCTTCTTGT
TTATGTGATACTAATTTAATGAGCAATTCAGTTTGCAGTATCATGAATATTTACTTCTTTATTA
TGACCAATAAATATTTATCACCGAGCACTAGGCAAATTCAGCCATGCAGATTTGAAATTGTTTG
CAACCAAGCAATATGCTATCCTAACATTAAGATAAAGAGAATCTGAACATGTTCTCTCTTCTTC
CTTCATAGCATTGAATGGCACTAAAACTGATGGATGTCAAGACACTGCATTTCATTCTAATATT
TGTAACAACACTTGACACTTGTGTATTAAATATATTACATTTCCATGTAATAATACCCCACTTA
TTTTGTCTTTTACCTATAAACTTTATTAAAGCTGTAGTGAATGATATTTCATTTGCAATGCGCT
TTTGTAACTAAAGGAATTGTTCCTTTTCAGAGCCCTGAGCTAAGACGATATCGAGAGCAAGTCC
AGGTCCTAGAGAGCAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021