Detail information of BGIOSGA032220_circ_igg.1


General Information
CircRNA Name BGIOSGA032220_circ_igg.1
ID in PlantcircBase osi_circ_008822
Alias Chr10:6350688_6352478(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 4846817-4848607  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTAATTGAAAGCCTACAGGATGCAAACTGCAAACCTCATCCAAGCCTACTGGCTCCATACTGT
TTTCTTGAGCTTGGCCAAATGATCGTACGCGAGAACcctttatatgtaagggggctgctgctgc
tgctggctcttccttatacgcaggtcatcagcaagctgagcacacttcttttttgtctccgcta
gttgttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTATATGTAAGGGGGCTGCTGCTGCTGCTGGCTCTTCCTTATACGCAGGTCATCAGCAAGC
TGAGCACACTTCTTTTTTGTCTCCGCTAGTTGTTGCTCTAGCTCCCCGACCTACCAAAAATCAT
TCAACTATGGTCAGGAGATATAATACGACCCTTGCCACTGGATAACACTAATCTGATGTTATGC
ATACCGTTTGCCTCAACTGTGTATCTCGTTGTCGAAGTTCTTCACGCCTGTACAGTACATTTCC
AGGCTCAGAATGCAAGGAAAAGGTGTAACAGGGATTTCACACAAAACACACTAATACCTAGTTT
AGGAATTGATTTTTTGCCTACATGGAAGAGAAACAAGCAGAGAGAAGCTGTATCTCCTTGAAGA
TTCTGTATGTCCTTGGAGATATGGCTTTTTAATATGGCTAATTAATTGATTATAAGGCCTAATT
GGCCAACTTCTAGAAAAACAATTGTTGATCCAATCAACAGATGAACCAAAACACGAGGCACACA
GTTCAATGATTCATCTATGGCATTAGCGAAATTATGGCATAACTAATGGTCTGTGCAAAATGGA
CAGAGAACTTAAACATAGATATATAATAAAAGGCACGATGTAACTCAATAGGAATCTGAACATA
TGTATGACAGTAATTGCTAAAATAGTTCCATCATAACGCAAAAGGCCTATATATGCACCCTCAT
GACTCATCAATGATCAACATTACCTTGTGAACAGACCGATGTTTTCTTCACTCAGCTTTTCCAT
GATATAGGGATCAAGTGCACCTTCAGAGCCAATATCTACTGAATTCTGAATACCACATAAAATT
CAAAGCAAACTAAAATATCAGTGTGTTTCATATGCTCTAAGAGGGATAAGATAATTAATCAGCA
AAAAATATTATCATAGCTATAAAAGTCTAACATATAGTTCAACAATGCTTCTGCTCAGGCGCCC
GATCAAAGCCACAAAGATTGGGCATGCTGTTGCCCGGCTGCTGCATGTCCAAACTGTCCAGCCA
CTGCATGTGCATGCACTAGCCTGTCTCCTTCTCTCCTACATGCAAGCAGTTTACTCTCTTCTCC
ATATTTCTTGCATGCAAGCATGCAAACTTTTTAGCTAGCTTAAAACGATTTCTCACCTAAATTA
TTTCTCCAATCTACAACCCATATACCGTTGTATTTGTGGTGATTAAACCTTTACAAGGAGATAT
CACATGATTATATTCTGATGAAAGAAAAACTTATGTTCAATTGTTGAAATTCAATGTTTCATAC
GTGATGGTTAAATGTTTCGACAGGTGTTTCACAAAATTTGTAAATGTTACAGAGACATTTTTTT
TGTTTCACTATGTACAACTTAGCGTTTCACCGGTGGTCAACTGAAACATTTGACAGCCCGATTT
TTGAGAGAAAATCTGGTGCCTGATTTATAGTAGTGTCCCATATAATTGGCATCATATGAATACA
CAAAGAACTACCTACAGCCAAAAGAAATACCAGATTGTTTTTTGTGTTTGATTAGTTTTTTTAT
TTAAGAAAGAGATCAAGAATTGAGTTTGTAGATGTTATTATAAAGACTATAAGCGGAAGGAGTG
GAAGCAGAATTCGTTCAACTGATCAACTCTTCAAGTGCTATGATGGGTTCCAAAGAAACCAAAA
GAATTAGCACCTACAAGCACAACATGACTTAATTGAAAGCCTACAGGATGCAAACTGCAAACCT
CATCCAAGCCTACTGGCTCCATACTGTTTTCTTGAGCTTGGCCAAATGATCGTACGCGAGAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021