Detail information of Zm00001d043093_circ_g.1


General Information
CircRNA Name Zm00001d043093_circ_g.1
ID in PlantcircBase zma_circ_007753
Alias Zm03circ00075, GRMZM2G009849_C1
Organism Zea mays
Position chr3: 189103323-189107371  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d043093
Parent gene annotation Protein MOR1
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d043093_T069:4
Zm00001d043093_T038:4
Zm00001d043093_T003:4
Zm00001d043093_T042:4
Zm00001d043093_T054:4
Zm00001d043093_T025:4
Zm00001d043093_T004:4
Zm00001d043093_T006:4
Zm00001d043093_T056:4
Zm00001d043093_T058:4
Zm00001d043093_T071:4
Zm00001d043093_T074:4
Zm00001d043093_T077:4
Zm00001d043093_T059:4
Zm00001d043093_T076:4
Zm00001d043093_T039:4
Zm00001d043093_T061:4
Zm00001d043093_T002:4
Zm00001d043093_T067:4
Zm00001d043093_T031:4
Zm00001d043093_T029:4
Zm00001d043093_T045:4
Zm00001d043093_T026:4
Zm00001d043093_T078:4
Zm00001d043093_T020:4
Zm00001d043093_T030:4
Zm00001d043093_T046:4
Zm00001d043093_T016:4
Zm00001d043093_T040:4
Zm00001d043093_T084:4
Zm00001d043093_T070:4
Zm00001d043093_T010:4
Zm00001d043093_T018:4
Zm00001d043093_T041:4
Zm00001d043093_T021:4
Zm00001d043093_T013:4
Zm00001d043093_T022:4
Zm00001d043093_T023:4
Zm00001d043093_T080:4
Zm00001d043093_T012:4
Zm00001d043093_T032:4
Zm00001d043093_T057:4
Zm00001d043093_T051:4
Zm00001d043093_T048:4
Zm00001d043093_T044:4
Zm00001d043093_T036:4
Zm00001d043093_T033:4
Zm00001d043093_T001:4
Zm00001d043093_T086:1
Zm00001d043093_T083:4
Zm00001d043093_T049:4
Zm00001d043093_T019:4
Zm00001d043093_T028:4
Zm00001d043093_T062:4
Zm00001d043093_T065:4
Zm00001d043093_T073:4
Zm00001d043093_T005:4
Zm00001d043093_T034:4
Zm00001d043093_T007:4
Zm00001d043093_T052:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCT
GTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGctattggcatactcaagcaagaggtgga
aagtcttacggaacttgataagtctgctgaacttctgattcgtttgttgtgtgctgtgcctgga
tggagcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTGGCATACTCAAGCAAGAGGTGGAAAGTCTTACGGAACTTGATAAGTCTGCTGAACTTCT
GATTCGTTTGTTGTGTGCTGTGCCTGGATGGAGCGAAAAGAATGTTCAGGTTCTTACTGTTTGG
TAACCTTTTTTGTTGAGTAAAATATCCCTTTGCTATGGAACTAATGCCATTTTAAATGAAACAG
GTACAACAACAAGTTATAGAGGTCATCACCTATGTCGCCTCGACTGTAAACAAATTTCCAAAGC
GATGTGTGGTTCTATGCCTTCTTGGTATGGGCCCCTCTACCTCTCCATGTACATTTTCTATGTA
GTGTGTATATCTTGCACCAAAAAATGAGATTGAATTTGGTTTCGTCAAATTACGCACCTAATGT
TAGCAAACTTGTCGACTAATTAAAACCATGATTTCTGAGCTTTGGACACAGTAATTATAAATAG
TTACACAGAAACTGGGTTCTAGACTGCTGGTTGAACGTAAGTTATCATGCCTTGGTTTGGTTGA
TGGGCTCATAAGCACAGGCTATTGACTTACATCCAGGGCCCGGGCTTAAGATCTTGTTTATGAA
GGGTTAGATACTTAGATTCACTGTATATGTGCACTTCATCTGCCTACTTAAATTAGGCATAATG
TTCTACACTTTTATTTAATCTGTCCCAGAATATAAAGATTTCCGTGCCTGTCCTGAACTAACCT
AAGTTTGACCATAATTATAGAAGTGAAGAATAATATTTACAGTGTCAAATTAGCATCATTAGAT
CCATTTTGAAATGTATTTTAAACTTTTTTGGCTTTCCAAATGTTGATACTTGTTATAAACTTGG
TCAAACTTTGCATAACTATCCCTTCAGTAATCCCTTCTGTTGGAAAGTCAAGCTAGGTTTGGAA
TTTAGGATAGGCTTGGAACTTGGGCCCCATGGTTTATTTAATTTAATTTCAACAAAGTTATGAA
TAATTTAATTTCATCAACTCTTTATTTCTAAACCAATAACTATCAAGCAGCCGAGGAGAAAGTT
CTATTTATGGATTTTTACTTTAATATACTTGTTTGTGGGCTTTTTTTCTCTTGAACACGTAGGG
GAACTGTGTATCATTAGACTAAGAAGAAAAGAAACTCGACCTACGGGGTAAGACCGGCCCCACG
ACATTATATTAAGAAGACCTCACGTAGGTCGAGAAACCCCCGAACCGCTACCCCGCCCATACAC
AACGACACCGTAGCCCATGTGGGAATGACCACGACCGGGCTCGAGCCTTAGACCTATGCTTTGG
CGTGGGACAGACACGGAGATTTTTTTAACCACAACTAGAAAGTTCGCTCCCATGACGAGTCGAA
CCCAGGACCTAAGGAGTGCTACTCAAACCACCTAAACCAACTCGGCTAGAGGCCCTTTCCCATA
CTAAGAAGAAAGAAAGGTCTAAAATAGACCGGTTACACTGCGCCTCAATTGGCAGCCTCACATA
ACCATGCCACCCAAAGTTACGCCCATAAACTTCAAAGTGCAGTCGCTCCAGCAATACCGCATAA
GTTAGCATCTTCCTGAATGGTTTGCATAAGTGTGTTGATGTTTGGGGAGGCTGCATCAAACACA
TGCATTCCTATGATTCCAAATCGACCAGGCCACCAGGATGACAATGGAATTAAATCATTTTTTT
CTGTGGTTTCTGCATCCTGCATTCAGCATCTGTCCAGCAATCTTGGAACACCATATCATCAATT
CTAGGCGCCAGATGCTGTAATCCCACTTTACTCAGAATTCAGAAACCGAAACCAGATGTCCCTA
GCGAAGACACAAGATACCAGAATGTGCTGAACTGTTTCCTGTTCCTGGTCACAGGGTAGACATC
TCTCTAGGTTATCTATGCCTCGTCTTGCTAGACGACCAGCAGTCCATCTTTTGTGGGAGGCCAA
TTAGACGAAAAATTTACAATGAGGTGGTGCTCAGCCTTTTCAGATCCTACTAGCTGGCTCAAAG
GATATTGAACTGGCAAGGAAACGATCATATGCAGATTTTTGCAGAGTACTCTTTGAGGATGTTG
GCAACCAACGGTGCTGATCAGGAACCCCTGGCTGGAGCTGAACTTCCTGAATTAAATCCCAGAC
GATGAGGAATTCAAGAATAACTTATGTTGGTAGACTACCAGAGATGTCTTTAACCCATCTATTC
TCCACCAAAGCCTTCTGGACTGTTCTCTTTTTCTTAATGCTTGCTGGGATACGGCTGTCAGAGC
TGGAGCTACTTGAAGCAGGGACAGCCCATGGAGCCAATGATCAGACCACAACAAAGTAGTAGCT
CCCATTACCATCAATAGAGTATACTGTGGCTGCAAATAAGGATGCAACATTAGGGTGTGTCTTA
ATACAAAATTCTGCCTATGGTCTATTTGGTTAAGTCTTATTAAGCCAAAGTCACCTTATATTCA
ACGCACAACCCAGAATTTCCAAGTTATGGATGCCCAGTCCTCTTTGAGAAAGCGGTCTGCAGGC
CCTAGCCCAACCAACAGAGCAATGTCCACCTTTGAGATCCGTTCTCCCTTTCCACAAGAATCCT
CTCCTAATTTTATCAATTGACTTGACAACCCATTTAAGGCATTGGAGAGCTACAAGGTGATAGA
TGGGAATGTCAGTAATCACAGATTTAACTAACGCAGCTTTCCCAGCCGGATGAATTAGTGCAGC
CTTCCAACCCGGCAACTTATTGGCAACATTGTCAATGAGCTCCAGGAAAGCACTCCTAGGGAGT
TTTTATAACAAAAAGTAGGAGTCCCAAATACTTACAGGGAAAAGCCACCACACTGCAAGGGAGC
ATGTTCTGTGCAGCAACAAAATCCTGAACCTCACACTGGACTGGTGTCAAACTGCATTTATTTC
GATTTGTGATCTGACCTGATGCCACACCAAAGATCTTTAGAATTGCTTTCACCATAGTAAGCTC
TTCTCCCCTCGGCTGCAAAAAGAGGACCACATCATCAGCATTCAAGGATACCCACTGACCAGAA
CCCTGTCTCAACAAAGGCAGCAGCAAACTGCAAACCTAGATCACTTGCTCTTTGAATTAAAGAA
TTCGGCACATCCATTACTAGGATGAAGAGCATTGGGGAGAGTGGATCTCCCTGTCCCAGCCCAC
GTTGGTGGCATATACGTTCCCCAGGCTCTCCATTCACCAACACTTTAGTCGAGGAGTGCAGCAG
CTTTGAAATTATGTTACACCACACAGGGCCAAATCCCAAGTGACGTAGAATTTCAGCAGAAATG
GCCAAGAGACTGAGTCAAATGCCTTGCCAATGGCCAACTTAAGGAGAACTTGTCTCTGATGTGC
TATAAGAGGGATGCGTGCTATTTTCTGTACTGTTTATTTATAAACAATGTAGCATGGAGATTCA
TCTTGGTACCCTTTTGCTGCCCAGCTTGTTTTTGTCTTTATTGTCACATCTATTTTTGGATGTC
CTAGTGTTGTCGGCTGAGCATACAAGATACATTGTGTTTAGTTGCATATAACCTATTGTTGTTG
ATCTATTTGTCTTAATTTATTGTTTTAAACATATTTCAAATGTTTCCCGTTCAATTCTTGATCA
TGTGCTATAAAGTTTGATTTTAGTAAATTTGTTGACACCTGTTTTGCTCTTTTCTCAGGTGTAA
GTGAAAGGGTTGCTGATATTAAAACACGGACCTATGCAATGAAATGTCTCACTGCCTTTTGTGA
GGCAGTAGGTCCTGGATTTGTGTTTGACAGGGTAAGAGATACCATTAGATTATTATTGTTTTTG
TTCAAAAGGTCCTCCACATTTGTTCAATCAACCCAATTAGGTGATTTTATATGCTGGTCCGCAA
TAAATTCAGAATGTGCACTGTCGAACATCTTTGCAATTTTATTTTGTGCTTTAGATGCACACTG
CTTATATGATGTATAATTATGAGTTTTAATTTTGTAGCTTTACAAAATAATGAAGGAGCACAAG
AATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCT
CCAATTTAAAGCTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.070795103
Functional Information
Coding potential Y
Potential coding position 189107010-189103385(+)
189103334-189107306(-)
Potential amino acid sequence MKCLTAFCEAVGPGFVFDRLYKIMKEHKNPKVLSDGILWMVSAVEDFGISNLKLKLLAYSSKRW
KVLRNLISLLNF*(+)
MPIALALNWRSQSLPQQRPSKEYHH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019