Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d043093_circ_g.1 |
ID in PlantcircBase | zma_circ_007753 |
Alias | Zm03circ00075, GRMZM2G009849_C1 |
Organism | Zea mays |
Position | chr3: 189103323-189107371 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d043093 |
Parent gene annotation |
Protein MOR1 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d043093_T069:4 Zm00001d043093_T038:4 Zm00001d043093_T003:4 Zm00001d043093_T042:4 Zm00001d043093_T054:4 Zm00001d043093_T025:4 Zm00001d043093_T004:4 Zm00001d043093_T006:4 Zm00001d043093_T056:4 Zm00001d043093_T058:4 Zm00001d043093_T071:4 Zm00001d043093_T074:4 Zm00001d043093_T077:4 Zm00001d043093_T059:4 Zm00001d043093_T076:4 Zm00001d043093_T039:4 Zm00001d043093_T061:4 Zm00001d043093_T002:4 Zm00001d043093_T067:4 Zm00001d043093_T031:4 Zm00001d043093_T029:4 Zm00001d043093_T045:4 Zm00001d043093_T026:4 Zm00001d043093_T078:4 Zm00001d043093_T020:4 Zm00001d043093_T030:4 Zm00001d043093_T046:4 Zm00001d043093_T016:4 Zm00001d043093_T040:4 Zm00001d043093_T084:4 Zm00001d043093_T070:4 Zm00001d043093_T010:4 Zm00001d043093_T018:4 Zm00001d043093_T041:4 Zm00001d043093_T021:4 Zm00001d043093_T013:4 Zm00001d043093_T022:4 Zm00001d043093_T023:4 Zm00001d043093_T080:4 Zm00001d043093_T012:4 Zm00001d043093_T032:4 Zm00001d043093_T057:4 Zm00001d043093_T051:4 Zm00001d043093_T048:4 Zm00001d043093_T044:4 Zm00001d043093_T036:4 Zm00001d043093_T033:4 Zm00001d043093_T001:4 Zm00001d043093_T086:1 Zm00001d043093_T083:4 Zm00001d043093_T049:4 Zm00001d043093_T019:4 Zm00001d043093_T028:4 Zm00001d043093_T062:4 Zm00001d043093_T065:4 Zm00001d043093_T073:4 Zm00001d043093_T005:4 Zm00001d043093_T034:4 Zm00001d043093_T007:4 Zm00001d043093_T052:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.070795103 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
189107010-189103385(+) 189103334-189107306(-) |
Potential amino acid sequence |
MKCLTAFCEAVGPGFVFDRLYKIMKEHKNPKVLSDGILWMVSAVEDFGISNLKLKLLAYSSKRW KVLRNLISLLNF*(+) MPIALALNWRSQSLPQQRPSKEYHH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |