Detail information of Zm00001d043835_circ_g.3


General Information
CircRNA Name Zm00001d043835_circ_g.3
ID in PlantcircBase zma_circ_007828
Alias Zm03circ00102, ZmciR148
Organism Zea mays
Position chr3: 211282391-211292087  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d043835
Parent gene annotation DNA ligase 6
Parent gene strand +
Alternative splicing Zm00001d043835_circ_g.1 Zm00001d043835_circ_g.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d043835_T002:6
Zm00001d043835_T006:6
Zm00001d043835_T003:6
Zm00001d043835_T008:6
Zm00001d043835_T007:6
Zm00001d043835_T004:6
Zm00001d043835_T009:3
Zm00001d043835_T005:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTAAATCAATCTTATTATCCACCTGGTAATGTGTGGTCCACTCTGCAGGTTGACATTTGTGT
GTTTGTTTTTGACATCATGTTCCATGATGGAGAGAGagtctttcaactgaagttgccgaggcat
acaatgtcactcctaatctagtaagagattgaatctatcacttgcgtcatatgcatttatcgtg
tcacacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.021651612
Functional Information
Coding potential Y
Potential coding position 211289036-211282436(+)
211288987-211292068(-)
211282420-211290134(-)
Potential amino acid sequence MVPGTPIPPMLARITNGLTQSLKAFHGRSFTCEYKYDGQRAQIHKALDGSVRIFSRQMKESTSR
FPDLVNMIKELCKPEVSSFILDAEVVGINRKKGNELMSFQELSSRERGNKHSSISIENIKVDIC
VFVFDIMFHDGERVFQLKLPRHTMSLLI*(+)
MSKSRLGVTLYASATSVERLSLHHGT*(-)
MPRQLQLKDSLSIMEHDVKNKHTNVNLYVLY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019