Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d043835_circ_g.3 |
ID in PlantcircBase | zma_circ_007828 |
Alias | Zm03circ00102, ZmciR148 |
Organism | Zea mays |
Position | chr3: 211282391-211292087 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d043835 |
Parent gene annotation |
DNA ligase 6 |
Parent gene strand | + |
Alternative splicing | Zm00001d043835_circ_g.1 Zm00001d043835_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d043835_T002:6 Zm00001d043835_T006:6 Zm00001d043835_T003:6 Zm00001d043835_T008:6 Zm00001d043835_T007:6 Zm00001d043835_T004:6 Zm00001d043835_T009:3 Zm00001d043835_T005:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.021651612 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
211289036-211282436(+) 211288987-211292068(-) 211282420-211290134(-) |
Potential amino acid sequence |
MVPGTPIPPMLARITNGLTQSLKAFHGRSFTCEYKYDGQRAQIHKALDGSVRIFSRQMKESTSR FPDLVNMIKELCKPEVSSFILDAEVVGINRKKGNELMSFQELSSRERGNKHSSISIENIKVDIC VFVFDIMFHDGERVFQLKLPRHTMSLLI*(+) MSKSRLGVTLYASATSVERLSLHHGT*(-) MPRQLQLKDSLSIMEHDVKNKHTNVNLYVLY*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |