Detail information of AT2G23380_circ_g.2


General Information
CircRNA Name AT2G23380_circ_g.2
ID in PlantcircBase ath_circ_014546
Alias NA
Organism Arabidpsis thaliana
Position chr2: 9956493-9956654  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G23380
Parent gene annotation Histone-lysine N-methyltransferase CLF
Parent gene strand +
Alternative splicing AT2G23380_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G23380.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCAGTGATAGTGAAGAGGAGGCCATTGACGACGAAGAAGAAAAAAGAGATTTTTTGGAGCCT
GAAGATTATATTATTCGaaatcaaagaatgactgaagaccagtctgtagtgggtcgaaggagaa
tttattatgatcaaactggcggggaagcgcttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATCAAAGAATGACTGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACT
GGCGGGGAAGCGCTTATCTGCAGTGATAGTGAAGAGGAGGCCATTGACGACGAAGAAGAAAAAA
GAGATTTTTTGGAGCCTGAAGATTATATTATTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.431579835
Functional Information
Coding potential Y
Potential coding position 9956503-9956651(+)
Potential amino acid sequence MTEDQSVVGRRRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGR
RRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGRRRIYYDQTGG
EALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGRRRIYYDQTGGEALICSDSEE
EAIDDEEEKRDFLEPEDYII(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017