Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G23380_circ_g.2 |
ID in PlantcircBase | ath_circ_014546 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 9956493-9956654 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT2G23380 |
Parent gene annotation |
Histone-lysine N-methyltransferase CLF |
Parent gene strand | + |
Alternative splicing | AT2G23380_circ_g.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G23380.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.431579835 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9956503-9956651(+) |
Potential amino acid sequence |
MTEDQSVVGRRRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGR RRIYYDQTGGEALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGRRRIYYDQTGG EALICSDSEEEAIDDEEEKRDFLEPEDYIIRNQRMTEDQSVVGRRRIYYDQTGGEALICSDSEE EAIDDEEEKRDFLEPEDYII(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |