Plant Circular RNA Database

Detail information of 5_circ_ag.2

			
						 General Information
					
						CircRNA Name
						5_circ_ag.2
					
						ID in PlantcircBase
						ath_circ_045422
					
						Alias
						5:25181869-25184894
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 25181869-25184894  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G62690_circ_g.1 5_circ_ag.3 AT5G62690_circ_g.4 AT5G62690_circ_g.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 AT5G62700_circ_g.1 						
					
						Support reads
						6/9
					
						Tissues
						flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.2
ID in PlantcircBase	ath_circ_045422
Alias	5:25181869-25184894
Organism	Arabidpsis thaliana
Position	chr5: 25181869-25184894 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G62690_circ_g.1 5_circ_ag.3 AT5G62690_circ_g.4 AT5G62690_circ_g.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 AT5G62700_circ_g.1
Support reads	6/9
Tissues	flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTG
TTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAGggacactacacggaaggagctgaactaa
tcgattccgttctcgatgttgttcgtaaggaagctgagaactgtgactgtctccaaggttattc
ttcttctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 3026
Transcript exons: 25181869-25184894
GGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTG
AGAACTGTGACTGCCTCCAAG
						
					

						Genomic sequence
						
							GGACACTACACGGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTG
AGAACTGTGACTGTCTCCAAGGTTATTCTTCTTCTTCTTATAGATCTGTTTGATTTTAGTGTTG
ATAATGCTTTACTAGTGTTTTGAACTGTGAGATTTCCTTGTGTAGGGTTCCAGGTTTGTCACTC
GTTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTAC
CCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTTG
AGCCTTACAACGCTACTCTGTCTGTCCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCT
TGATAATGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTAAG
ATTTCATTTCCCAATTATGCTCTCCACCAATGTTAAGATGAGTTAAACTATGCTTGAAATGCTT
GGTCTACATGGTGTTTATGTTAATAATTGGTATCAAGTTCAGATCTGCAAGCATCTATGTAAAG
CTTATAGTATTGTTACTGTTTCCATTGGTTTGCTCTTTGACTATGTCACTGTTTTATATCAGAA
TTCTGATTTGCAAGTCTCTGTGCAGAACTTATACTTTTGTTACTGTTTCCAGTCGTTTTGTACA
TATCTTTAGCCTCTTGTTTTGTGTGATATTGCTTCTGTTTACCTATTTTGATCTCATCACCGAA
GTAGGTCCTTAAACTACTCTTATTGGAACAATACTTTCTGGTTAAGTTGCAAGTAGAAATCTGA
TACTTGATGATCATCAGTTTGTTGAGTTTACTGTCTGCTTTGATTCTTTTCTCATCGTACTGTT
TGGATATGTCTAAAGCTTACACATACTTGGATTTTCTTCTGTGTGCAGTTGGTGATTTGAACCA
CTTGATTTCTGCTACTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCT
GACCTCCGAAAGCTTGCTGTGAATCTCATCCCATTCCCCCGTCTTCACTTCTTCATGGTGGGTT
TTGCTCCTCTCACCTCAAGAGGTTCTCAGCAGTACCGTTCCCTCACAGTCCCTGAGCTCACCCA
GCAAATGTGGGACTCCAAGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACA
GCCTCTGCCATGTTCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTGC
AGAACAAGAACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCGACAGTCTGTGA
CATCCCACCTACTGGTCTGAAGATGGCATCAACTTTCATTGGAAACTCAACATCAATCCAAGAG
ATGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGT
ACACAGGTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGT
GTCAGAGTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAA
GAAGGTGAATATCAACAGGAGGAAGAGTACTGAGAATAATTTAGTTATAACTGCTTTAAAAACA
AAAACAATTTAGTCGTTTGCTACTTTTCTTTTTTTTAAAAGGAACACCTCAACTACCAGTTGTA
GTTTTTTTCTCTGCTTGTATTTGACATATCTGGTTGATGTTTCTGTACTTTTGTTCTTAATCTT
GTTATTGCCTGTGATGTTTCTATTAATATTTTCCAGTTGTACTGTCTTCAATCTTTGGTCTTCT
ATCCTCATCTTTCTGCTACCTGACTACCTCAGTACCTACTTAAGGACTTTAGGTTTGATCTGTT
TGGAAAATAGATTAAGGTTCGGGATTTGTGACCTCAGGGCAAGTGCAGCTCCATATTAGACCCC
AAAACAAATTTATCACTGTTCTGAAATACAAATTCCCCAACATGCCTAGCTTTGAGGATTGATT
GTTTCTAAGCTATTTATTTTCTTTACCAATTCACATAAATACTTTAGGATAAAGTGGAAATTGT
CAATATTCAAACACGTTCTCTTCCCTTTGTTAACAAGCAAAATATGAAAATAACATGTGCTCTT
CCATTATTTCATTTTTTGCAACCCTTATGAATGGGCCCAAAGCCTGCCACAAACATGTGCACAA
TATTAGAAAAGAAACTCTAAAAACAAAAACAAAATGAACATTCTTTTTTTTGCAATTTGTATTA
TAATATCAAAATAATATTTTAAAACTCAATTTAATATTGGAAAATAAAATAAAATTTGGAAACT
AAACAGTTACCATAGAGAAAGAAACGGACCATTTTTAAATTTTGAATTTCGAGAAAAACAAAAT
CGGCGCCTCTTATTAGAGATAATTGGGGGAAAAAAACAAAAAACAAACACAGAGAGAGCAATAA
TAAAAACTCACTCACTCTCACTTTTTTCATTTCTTCAACAAAAAAAACCTAAAGCTCTCTTTTC
TCTCCAGATTTCGATTCCCGAGGCTCGAGAGAAAACCGTAAATCTCTTCTCCGTTCACTCAATC
AACCAAAGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAA
GTTCTGGGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCA
GATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTC
GTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCA
GACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGA
CACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGA
ACTGTGACTGCCTCCAAG
						
					

			
		

Sequences
Splice junction sequence	AACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTG TTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAGggacactacacggaaggagctgaactaa tcgattccgttctcgatgttgttcgtaaggaagctgagaactgtgactgtctccaaggttattc ttcttctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 3026 Transcript exons: 25181869-25184894 GGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTG AGAACTGTGACTGCCTCCAAG
Genomic sequence	GGACACTACACGGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTG AGAACTGTGACTGTCTCCAAGGTTATTCTTCTTCTTCTTATAGATCTGTTTGATTTTAGTGTTG ATAATGCTTTACTAGTGTTTTGAACTGTGAGATTTCCTTGTGTAGGGTTCCAGGTTTGTCACTC GTTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTAC CCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTTG AGCCTTACAACGCTACTCTGTCTGTCCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCT TGATAATGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTGTAAG ATTTCATTTCCCAATTATGCTCTCCACCAATGTTAAGATGAGTTAAACTATGCTTGAAATGCTT GGTCTACATGGTGTTTATGTTAATAATTGGTATCAAGTTCAGATCTGCAAGCATCTATGTAAAG CTTATAGTATTGTTACTGTTTCCATTGGTTTGCTCTTTGACTATGTCACTGTTTTATATCAGAA TTCTGATTTGCAAGTCTCTGTGCAGAACTTATACTTTTGTTACTGTTTCCAGTCGTTTTGTACA TATCTTTAGCCTCTTGTTTTGTGTGATATTGCTTCTGTTTACCTATTTTGATCTCATCACCGAA GTAGGTCCTTAAACTACTCTTATTGGAACAATACTTTCTGGTTAAGTTGCAAGTAGAAATCTGA TACTTGATGATCATCAGTTTGTTGAGTTTACTGTCTGCTTTGATTCTTTTCTCATCGTACTGTT TGGATATGTCTAAAGCTTACACATACTTGGATTTTCTTCTGTGTGCAGTTGGTGATTTGAACCA CTTGATTTCTGCTACTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCT GACCTCCGAAAGCTTGCTGTGAATCTCATCCCATTCCCCCGTCTTCACTTCTTCATGGTGGGTT TTGCTCCTCTCACCTCAAGAGGTTCTCAGCAGTACCGTTCCCTCACAGTCCCTGAGCTCACCCA GCAAATGTGGGACTCCAAGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACA GCCTCTGCCATGTTCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTGC AGAACAAGAACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCGACAGTCTGTGA CATCCCACCTACTGGTCTGAAGATGGCATCAACTTTCATTGGAAACTCAACATCAATCCAAGAG ATGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGT ACACAGGTGAGGGAATGGACGAGATGGAATTCACAGAAGCGGAGAGCAACATGAACGATCTTGT GTCAGAGTACCAGCAATACCAAGATGCAACTGCGGATGAAGAAGGTGACTACGAGGATGAGGAA GAAGGTGAATATCAACAGGAGGAAGAGTACTGAGAATAATTTAGTTATAACTGCTTTAAAAACA AAAACAATTTAGTCGTTTGCTACTTTTCTTTTTTTTAAAAGGAACACCTCAACTACCAGTTGTA GTTTTTTTCTCTGCTTGTATTTGACATATCTGGTTGATGTTTCTGTACTTTTGTTCTTAATCTT GTTATTGCCTGTGATGTTTCTATTAATATTTTCCAGTTGTACTGTCTTCAATCTTTGGTCTTCT ATCCTCATCTTTCTGCTACCTGACTACCTCAGTACCTACTTAAGGACTTTAGGTTTGATCTGTT TGGAAAATAGATTAAGGTTCGGGATTTGTGACCTCAGGGCAAGTGCAGCTCCATATTAGACCCC AAAACAAATTTATCACTGTTCTGAAATACAAATTCCCCAACATGCCTAGCTTTGAGGATTGATT GTTTCTAAGCTATTTATTTTCTTTACCAATTCACATAAATACTTTAGGATAAAGTGGAAATTGT CAATATTCAAACACGTTCTCTTCCCTTTGTTAACAAGCAAAATATGAAAATAACATGTGCTCTT CCATTATTTCATTTTTTGCAACCCTTATGAATGGGCCCAAAGCCTGCCACAAACATGTGCACAA TATTAGAAAAGAAACTCTAAAAACAAAAACAAAATGAACATTCTTTTTTTTGCAATTTGTATTA TAATATCAAAATAATATTTTAAAACTCAATTTAATATTGGAAAATAAAATAAAATTTGGAAACT AAACAGTTACCATAGAGAAAGAAACGGACCATTTTTAAATTTTGAATTTCGAGAAAAACAAAAT CGGCGCCTCTTATTAGAGATAATTGGGGGAAAAAAACAAAAAACAAACACAGAGAGAGCAATAA TAAAAACTCACTCACTCTCACTTTTTTCATTTCTTCAACAAAAAAAACCTAAAGCTCTCTTTTC TCTCCAGATTTCGATTCCCGAGGCTCGAGAGAAAACCGTAAATCTCTTCTCCGTTCACTCAATC AACCAAAGATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAA GTTCTGGGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCA GATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTC GTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCA GACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGA CACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGA ACTGTGACTGCCTCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.603830062

Conservation Information
Conserved circRNAs	NA
PMCS	0.603830062

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5632-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5632-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.2

Address

Any questions?

Supported by