Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d021846_circ_g.4 |
| ID in PlantcircBase | zma_circ_009444 |
| Alias | zma_circ_0002626, GRMZM2G081155_C2 |
| Organism | Zea mays |
| Position | chr7: 164398276-164401123 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d021846 |
| Parent gene annotation |
Insulin-degrading enzyme-like 1 peroxisomal |
| Parent gene strand | - |
| Alternative splicing | Zm00001d021846_circ_g.1 Zm00001d021846_circ_g.2 Zm00001d021846_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d021846_T008:7 Zm00001d021846_T023:7 Zm00001d021846_T013:7 Zm00001d021846_T016:7 Zm00001d021846_T018:7 Zm00001d021846_T006:7 Zm00001d021846_T012:6 Zm00001d021846_T015:7 Zm00001d021846_T020:5 Zm00001d021846_T004:7 Zm00001d021846_T007:8 Zm00001d021846_T021:7 Zm00001d021846_T010:7 Zm00001d021846_T002:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osa_circ_034423* |
| PMCS | 0.174360571 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
164401044-164398278(-) |
| Potential amino acid sequence |
MQIFPPKDWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEV VPPSIIQKWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFT PKAYIKMDFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVG FNDKMRTLLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPK DWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQ KWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKM DFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRT LLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASS VPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAP EEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLS QSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIG KIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASSVPSKFSP DAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAPEEDLHLP KRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLSQSSPESA VLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIGKIAEFEV KADRFSVIK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |