Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d021846_circ_g.4 |
ID in PlantcircBase | zma_circ_009444 |
Alias | zma_circ_0002626, GRMZM2G081155_C2 |
Organism | Zea mays |
Position | chr7: 164398276-164401123 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d021846 |
Parent gene annotation |
Insulin-degrading enzyme-like 1 peroxisomal |
Parent gene strand | - |
Alternative splicing | Zm00001d021846_circ_g.1 Zm00001d021846_circ_g.2 Zm00001d021846_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d021846_T008:7 Zm00001d021846_T023:7 Zm00001d021846_T013:7 Zm00001d021846_T016:7 Zm00001d021846_T018:7 Zm00001d021846_T006:7 Zm00001d021846_T012:6 Zm00001d021846_T015:7 Zm00001d021846_T020:5 Zm00001d021846_T004:7 Zm00001d021846_T007:8 Zm00001d021846_T021:7 Zm00001d021846_T010:7 Zm00001d021846_T002:7 |
Conservation Information | |
---|---|
Conserved circRNAs | osa_circ_034423* |
PMCS | 0.174360571 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
164401044-164398278(-) |
Potential amino acid sequence |
MQIFPPKDWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEV VPPSIIQKWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFT PKAYIKMDFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVG FNDKMRTLLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPK DWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQ KWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKM DFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRT LLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASS VPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAP EEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLS QSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIG KIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASSVPSKFSP DAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAPEEDLHLP KRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLSQSSPESA VLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIGKIAEFEV KADRFSVIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Ma et al., 2021b;Zhang et al., 2019 |