Detail information of Zm00001d021846_circ_g.4


General Information
CircRNA Name Zm00001d021846_circ_g.4
ID in PlantcircBase zma_circ_009444
Alias zma_circ_0002626, GRMZM2G081155_C2
Organism Zea mays
Position chr7: 164398276-164401123  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d021846
Parent gene annotation Insulin-degrading enzyme-like 1 peroxisomal
Parent gene strand -
Alternative splicing Zm00001d021846_circ_g.1 Zm00001d021846_circ_g.2 Zm00001d021846_circ_g.3
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d021846_T008:7
Zm00001d021846_T023:7
Zm00001d021846_T013:7
Zm00001d021846_T016:7
Zm00001d021846_T018:7
Zm00001d021846_T006:7
Zm00001d021846_T012:6
Zm00001d021846_T015:7
Zm00001d021846_T020:5
Zm00001d021846_T004:7
Zm00001d021846_T007:8
Zm00001d021846_T021:7
Zm00001d021846_T010:7
Zm00001d021846_T002:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAACCGAAGTACCTGCATGTTAGAAGAAATATTTACAACATAATTGATAGGGGGGCTCTTGTC
TCGGTAGTGGAATCCTGTCTCACAGATAGCTTGAAGctttatcacagaaaaacggtcagcctta
acttcaaattctgcaatttttccaataacagtctccaaaagggttctcattttgtcattgaagc
caaccata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 747
Transcript exons: 164398276-164398380,164399122-164399183,164399627-164399
816,164399887-164399982,164400062-164400164,164400287-16
4400390,164401037-164401123
CTTTATCACAGAAAAACGGTCAGCCTTAACTTCAAATTCTGCAATTTTTCCAATAACAGTCTCC
AAAAGGGTTCTCATTTTGTCATTGAAGCCAACCATAGTTACCTGAAAACCAGTGTCATTTGGCT
TAACAACATAATAGAGGCCAGCAACTTGGGCGTCATAAGCATAATCATTCAAATAATCCATAAG
CAACCTTGTGAATACATCAGTAAGAACTGCCGACTCAGGTGAGCTTTGAGATAGTGGACAGTGA
AAATCCATCTTGATATAAGCCTTGGGTGTGAAAAACATTGTATCGGGCTTGTACCAGAGTCTCG
AAAATTGTGTCTTCCTCAGCATGGCAGGAAAACTTACCTTTTCCTCTACACTTCTCAGTGAAAG
ATCACTTGGAATGAAGATGTTACGCTTTGGCAGGTGTAGATCTTCCTCAGGGGCTTTCCCTACC
CATTTCTGTATGATTGATGGAGGGACAACTTCGACAGAATATGATGTACCATACCATGGCTCTG
CTAATTTTGTTTTCCCTTCAAACTTTTTCGATTCCCAGAATATTCTTACAGTCTCAGGAGTCAG
TTCATTTAAAACATTCTGAATAGCATCTGGTGAAAACTTTGATGGCACAGATGACGCAATCAAC
CAATCTTTTGGTGGAAAAATCTGCATGTTAGAAGAAATATTTACAACATAATTGATAGGGGGGC
TCTTGTCTCGGTAGTGGAATCCTGTCTCACAGATAGCTTGAAG

Genomic sequence CTTTATCACAGAAAAACGGTCAGCCTTAACTTCAAATTCTGCAATTTTTCCAATAACAGTCTCC
AAAAGGGTTCTCATTTTGTCATTGAAGCCAACCATAGTTACCTACAAGATAGTACAAACATCGA
ATGGTAAAGGGACAGCCTTAAGTTTCCAAAACGAAAACAAGAAATTCATTTTGTATCATGTTAC
CCAGTGTCGTAGGCTTCCCGCACTGTGCGGGGTCTGGGAAAGGGTATCTTTAAGCGCCAAGCCT
TACCCGCATAATATGCAGAGGCTGGGGCTCGAACCCGGGACCTTCCGGTTACAGACGGTAGGCT
CTACCGCTGCACTAGGCCCGCCCTTCCTCATTTTGTATATTAAATATATTCCCTCAATTCAAAA
TTATAAGGTGTTTTTACTTTTCTAGATACATTGATTTGATTATGTATCTAGACATAGTGTATAT
CTAAGTGTATGGCAAAAACTATGTATCTAGAAAAGCCAAAATGTCTTATAATTTGGAATGGAGA
GAGTAGGTAGTAACCCAATAAATAATAAGTAGAAAAATACATCCGTCATCAAGGAACATCAGGC
AGGCACTCTGGTACCATGCAGTCTATGTGAGCACATGAGCGTTGCAAGGGGCATCAGAACTTAC
AACCGACTAAAATGTGTTTTGTAAATTGTAAAAGCACCAGACAGCAAAGAAACAGTAAAACTTC
ATACTGTAAAAGTGAGCATGCATCGAGTAAGATATGAGGTATTATATCGGTCCAAGTACTATGT
TTTTACACCAGTAAAAAAATACAAAAAATAAACAAATTATAGACTAATATATGTGTGTGAATTA
CTTGAACAACCAACCTGAAAACCAGTGTCATTTGGCTTAACAACATAATAGAGGCCAGCAACTT
GGGCGTCATAAGCTGAAAGCAAAAAGAAAATTGGTGTCATTACAAAAGATAAGAGTGCAAGTCT
GAAACAAGTTAACTTAAAAAAAACAGTACAACCTTCCATGATACAATGCCTGACTCATGAAAAA
ACATGTATCTCAGAAAGCCAACACCAGAGAATAACATTTGTAAAACACATTTCACGGACATCCC
ATATTGGTATTTTATGTTACCTTTTTATTTCTTTAACTCGTTGTATTAACTGGTGTATATGTAT
ATGAATTATTGCTAAATATGTTCCAATAAGAATTTTTTCACAGTTTCCATTTCTAGTATCTAAT
ACATGTTGTATCCATTAATATACCCATGAGAAATTATATGACAAACAAGTGAAAGAATGCACTA
AACAAATTGATCAGCCTGTGTTGGAACTTGGAAGAACCATAACAACAAATATCTAAGGGAGTCA
TACATACCATAATCATTCAAATAATCCATAAGCAACCTTGTGAATACATCAGTAAGAACTGCCG
ACTCAGGTGAGCTTTGAGATAGTGGACAGTGAAAATCCATCTTGATATAAGCCTTGGGTGTGAA
AAACATTGTATCGGGCTTGTACCAGAGTCTCGAAAATTGTGTCTTCCTCAGCATGGCAGGAAAA
CTTACCTGGATGTAACAGAGATAGAGCATAAGCAGACAAGATGAAGTTAAGCAGGCAAGCCATT
CAAAATATTACCTTTTCCTCTACACTTCTCAGTGAAAGATCACTTGGAATGAAGATGTTACGCT
TTGGCAGGTGTAGATCTTCCTCAGGGGCTTTCCCTACCCATTTCTGCAAAATAATTGCCGTATA
CAAGACACAGGTACTTTTCTAGCTTCAACACAGAAAGTAATGATGTCCAAAAATGTACCTGTAT
GATTGATGGAGGGACAACTTCGACAGAATATGATGTACCATACCATGGCTCTGCTAATTTTGTT
TTCCCTTCAAACTTTTTCGATTCCCAGAATATTCTGATAGGAAATATGGAGAGCAAAGGGAGAT
TAAAACAGAGGGAGCAAAACAAAAATTGCAAGACAGAAAATAAATTTCTCCATTTGTAATTTGT
ATGCTCACGTAGTGCCTTGAGAATTACCTTACAGTCTCAGGAGTCAGTTCATTTAAAACATTCT
GAATAGCATCTGGTGAAAACTTTGATGGCACAGATGACGCAATCAACCAATCTTTTGGTGGAAA
AATCTGTGGTGATAACAAAAAGGGTCCATTAATGGGTGCCATAGTTTACCGTTATTATAAAAAG
AAAATAAGCATTTGGGGTAGCTTACAGCCTTACACTATATTAATCAAGGGAACTACCATATCCC
GATATAATGTATAAAAATGACATTGTACAACATTTGTATAATTTTGTGTGAATTTGCCTACATA
ATACATATAGATCAACATTTACCACACTCAGATTGCTATGTGCCTAGACATGACTACCACAATC
ATGGAAATTGTGAAATGTGTTCTGTGGAAACCAAAGTAGGATGTTTCTACATATTATTTTGGTC
CTTCAATGGCATGCAAATTAAAAAATGATGATATATTGCTTTTCTTTCATTCAATAATAAGTTT
TACTCACTGTATAGAAGCAATTCACAGAGACAAAAGGTTCAGGTTGCAAAAGTCAAGATATCAT
TTAAATATATGTGAATTGCATTAAAGTGCATCAGAATCAGATGTTACCAGTTTTTAGTTTCCAT
TTAAATACATGTGAATTGCACTAAAGTGCATCAGATGTCACCAATTTTTAGTTTACAACAAGCA
TGTGCAAATAAATCCAGTATACAGAAGGGCAACAGTTGTGAAAATAAATTTAAGATAAGCATAA
CCGAAGTACCTGCATGTTAGAAGAAATATTTACAACATAATTGATAGGGGGGCTCTTGTCTCGG
TAGTGGAATCCTGTCTCACAGATAGCTTGAAG
Conservation Information
Conserved circRNAs osa_circ_034423*
PMCS 0.174360571
Functional Information
Coding potential Y
Potential coding position 164401044-164398278(-)
Potential amino acid sequence MQIFPPKDWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEV
VPPSIIQKWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFT
PKAYIKMDFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVG
FNDKMRTLLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPK
DWLIASSVPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQ
KWVGKAPEEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKM
DFHCPLSQSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRT
LLETVIGKIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASS
VPSKFSPDAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAP
EEDLHLPKRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLS
QSSPESAVLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIG
KIAEFEVKADRFSVIKLQAICETGFHYRDKSPPINYVVNISSNMQIFPPKDWLIASSVPSKFSP
DAIQNVLNELTPETVRIFWESKKFEGKTKLAEPWYGTSYSVEVVPPSIIQKWVGKAPEEDLHLP
KRNIFIPSDLSLRSVEEKVSFPAMLRKTQFSRLWYKPDTMFFTPKAYIKMDFHCPLSQSSPESA
VLTDVFTRLLMDYLNDYAYDAQVAGLYYVVKPNDTGFQVTMVGFNDKMRTLLETVIGKIAEFEV
KADRFSVIK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019