Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d008689_circ_g.1 |
ID in PlantcircBase | zma_circ_009559 |
Alias | zma_circ_0002912 |
Organism | Zea mays |
Position | chr8: 17231711-17231983 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d008689 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d008689_T001:1 Zm00001d008689_T002:1 Zm00001d008689_T003:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.308337637 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17231956-17231936(+) 17231982-17231713(-) |
Potential amino acid sequence |
MVNLARAYIPCPFFFLASTLTRPLLSDPLMGKMRKHRLLPSLNLKSFSFGPPPDITYALTSVPV RGAPITSRMAADVLSFVIASR*(+) MYARARLTINPDKVYRLAMTKLNTSAAILEVMGAPLTGTDVRAYVMSGGGPKLKDFKFKLGSKR CFLIFPIKGSERRGLVSVEAKKKNGQGMYARARLTINPDKVYRLAMTKLNTSAAILEVMGAPLT GTDVRAYVMSGGGPKLKDFKFKLGSKRCFLIFPIKGSERRGLVSVEAKKKNGQGMYARARLTIN PDKVYRLAMTKLNTSAAILEVMGAPLTGTDVRAYVMSGGGPKLKDFKFKLGSKRCFLIFPIKGS ERRGLVSVEAKKKNGQGMYARARLTINPDKVYRLAMTKLNTSAAILEVMGAPLTGTDVRAYVMS GGGPKLKDFKFKLGSKRCFLIFPIKGSERRGLVSVEAKKKNGQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |