Detail information of BGIOSGA032052_circ_g.5


General Information
CircRNA Name BGIOSGA032052_circ_g.5
ID in PlantcircBase osi_circ_008893
Alias Chr10:13635248_13635554(ZS97RS2), Chr10:13256155_13256461(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9973966-9974272  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2
Parent gene BGIOSGA032052
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032052_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA032052-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCCCAGCCCGAGGCGGCCGTCCGGTCGGCGACGACGATGTCGCCACCGCCGTGTTCGGCGCA
GAGGTACGTATTGTGGACCACCGACTTGAACTGGAGcctgtaggaatttcccatttgacgccct
gatgcggatcctgctattgtcacggtcgctgcgtacgatcacgaacgtctctgacggccctgga
gtggccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTAGGAATTTCCCATTTGACGCCCTGATGCGGATCCTGCTATTGTCACGGTCGCTGCGTAC
GATCACGAACGTCTCTGACGGCCCTGGAGTGGCCGCCGTCGCGACGACCACGCCATTGCCGTCG
ACGCCCACGAAGTGCACGGCGCTATCGTCGATCGCCTTGAGGTTGAACGTGTTCTCGTCGACCC
TCCACAGCTTGAAGGTTTCCCAGCCCGAGGCGGCCGTCCGGTCGGCGACGACGATGTCGCCACC
GCCGTGTTCGGCGCAGAGGTACGTATTGTGGACCACCGACTTGAACTGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021