Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0270100_circ_g.11 |
ID in PlantcircBase | osa_circ_023244 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 11280565-11285949 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0270100 |
Parent gene annotation |
Similar to GTP-binding protein. (Os04t0270100-01);Similar to GTP -binding protein. (Os04t0270100-02);Similar to G1 to S phase tra nsition protein 1 homolog (GTP-binding protein GST1- HS). (Os04t 0270100-03) |
Parent gene strand | + |
Alternative splicing | Os04g0270100_circ_g.8 Os04g0270100_circ_g.9 Os04g0270100_circ_g.10 Os04g0270100_circ_g.12 Os04g0270100_circ_g.13 Os04g0270100_circ_g.14 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0270100-03:9 Os04t0270100-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.104101543 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11285948-11285877(+) 11280632-11285934(-) |
Potential amino acid sequence |
MVISARKGEFETGYEKGGQTREHVLLAKTLGVAKLIVVINKMDEPTVKWSKERYDEIESKMVPF LRSSGYNVKKDVHFLPISGLLGSNMKTRMDKSICSWWDGPCLFEVLDCIEVPLRDPKGPVRMPI IDKYKDMGTVVMGKIESGTIREGDSLLVMPNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIE DEDIMAGFVLSSIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEI DMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLRTEGKRWL*( +) MFTSLSSFFVTSFKFTFSGRYNHPVQN*(-) |
Sponge-miRNAs | osa-miR2093-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |