Detail information of Os04g0270100_circ_g.11


General Information
CircRNA Name Os04g0270100_circ_g.11
ID in PlantcircBase osa_circ_023244
Alias NA
Organism Oryza sativa
Position chr4: 11280565-11285949  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0270100
Parent gene annotation Similar to GTP-binding protein. (Os04t0270100-01);Similar to GTP
-binding protein. (Os04t0270100-02);Similar to G1 to S phase tra
nsition protein 1 homolog (GTP-binding protein GST1- HS). (Os04t
0270100-03)
Parent gene strand +
Alternative splicing Os04g0270100_circ_g.8 Os04g0270100_circ_g.9 Os04g0270100_circ_g.10 Os04g0270100_circ_g.12 Os04g0270100_circ_g.13 Os04g0270100_circ_g.14
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0270100-03:9
Os04t0270100-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATCATTTCAGGTAAGACGGTGGCTGTAGGGAAGGTTGTTGCTATTCCACCAGCTGGCAGCC
CAACATTTTCAGCTTAAGTCAATTTTGAACAGGATGgttatatctgcccgaaaaggtgaatttg
aaactggttacgaaaaaggaggacagactcgtgaacatgtactgcttgcaaaaactttaggtgt
tgctaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.104101543
Functional Information
Coding potential Y
Potential coding position 11285948-11285877(+)
11280632-11285934(-)
Potential amino acid sequence MVISARKGEFETGYEKGGQTREHVLLAKTLGVAKLIVVINKMDEPTVKWSKERYDEIESKMVPF
LRSSGYNVKKDVHFLPISGLLGSNMKTRMDKSICSWWDGPCLFEVLDCIEVPLRDPKGPVRMPI
IDKYKDMGTVVMGKIESGTIREGDSLLVMPNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIE
DEDIMAGFVLSSIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEI
DMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLRTEGKRWL*(
+)
MFTSLSSFFVTSFKFTFSGRYNHPVQN*(-)
Sponge-miRNAs osa-miR2093-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017