Detail information of BGIOSGA034928_circ_ag.1


General Information
CircRNA Name BGIOSGA034928_circ_ag.1
ID in PlantcircBase osi_circ_009308
Alias Chr11:4215541_4219570(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 3897613-3901643  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034929_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATAATAGATATATTTTCAGGTACCGTCCGTTCAAGGCATATGGACATTCCAAATTAGCGAAT
ATTCTCCATGCAAATGAACTATCCAGGCGTTTTCAGggaagaaggatgtaatttgactgcaaat
tccctgcatcctggagtgatcctcaccaatatcactcgttatgtcgtcacaaacagtaatgtca
acacaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAGAAGGATGTAATTTGACTGCAAATTCCCTGCATCCTGGAGTGATCCTCACCAATATCACT
CGTTATGTCGTCACAAACAGTAATGTCAACACAAACCTTTCTTCAGTTATTATTACCTGTTCCA
ACCTCCAAATCCCATATCCTCTCTGAATATTTCGCAGGCGTGATGGTTTCAATCCTTTCTGTGG
GAAACCTCTTTCTGAAGAACACACAACAGGTAATCGATTCCAATCTTGTTACCACTCAACAATC
CAATCGTAAAATCTTCAGTAACTAGCTAGTGTCACAAATAAGATATATTTTACCTGGCATGATG
AACTTCAATCTAATTTTTTACAGGGAGCTGCAACCACATGCTATCTGGCACTGCATCCTGAACT
GAAGGATGTCTCCGGCAAATACTTCGCGGACTGCAAGGAAGCCACGCCGAGGCCTGCTGCGAGA
GACGCAGAGCTAGCGAAGAGGCTATGGGATTTCAGCGAACAGCTCGTGGATACTAATCGTCGTG
GAGAATTCAACAGACAAAAATGACACTGTTTAGACTGTCTGAAATTCTGAACCTGACCATGTCT
CAACCTGAGATCCTTCAGATACAGAATTTTATTTTTTATTTCTATTTTTTATTTTTTTTCAATG
GAATGATACAGCTTATATAATATGACCATAGAGCTGTTTGTCAGTACTGTTGTTTGCATGTGTA
AACAAATTCAAATGCATTAATAATCAGCCTGCTTTTTTTGCCATTTCGTTTCAGAAGAAAATAA
TTGGTCAACCTGTTTTTCTTGACCGTTCTCGAGCTCCATCCATGGATATGGCTAAGGCTCTTCC
AAGAATCGACGAAATGGACTAAACGGAGAAGAAATGTCGCTGCCAATGATACCAATAACTCTGG
AGTCTGCAGTACGAATTGTCTGCTCACGTCAGTGTCATTTTTGTCCAATCAATCAATCTAGACA
CCTCTGAAAAGTGAAAACCGGTTTTCCACAGGTGATCTCTGAAAATTCCAAGTGTGAGATCCTT
CTGAACCTGTTGAAAAATCATCTGATCAGAAATTCAGAATCTTCTTCGCCAAACAAAAGCATCT
TTAGACAAAAATTCAGAACACTGCGACCGGTGTTGTCATGTGTGAAGTTGTGTTACACTGTGCG
CCACACAAGTCACTGTCTCCTCCCAGACGGAGAACGGCAACAAATACTTCTGCTTCTGCACAAT
TCTGATTTCTCTGAAACTTCGGCTGCTGACCAGTTTGTAGTTCAGGAGAACAAGGAGGAGGAGG
AATGGGGTTTAGCTGGGGATGGCTGTGTGGACGGCGCAATGGGCCATCGGGCTTCGGCGGGGCA
TCCACTGCCGACGAGGTCACCGCCGGCGTCGACGCCAGCCGCCTGACGGTCGTCGTCACAGGTT
TGCTCGGCCTGTCGCCGTTTCATGTCTTTGACAATGTTCTTGATTTCCTTTTTCCCTTCATTTT
ATCAGCGTCCGTATATATAGGACTCCGGGATTTTGTCCAACAGTTTATTGGATAAATATGAGTA
TGAAACTTGAATTTAGAGGTGAATTTGTATAGTTTGTAGATTCATCCGGTAAGAATGTAGTGCA
GCACTGGTACACACCATTCTGAATTTCTGAAAGCATGGTGCCAATTCCACTCAAGGTTCAGAAA
ACAATTGAAAAGAAAACGATTCAATGAATCTTCGCGCTGTCTGCTGCGGATCGTTCAAAAAAAA
AACAACTGAAAACTAGCTGGTAGCCCAAACCTGGTAAACTCCATTCTCAATCAGCTTTTGTACC
AATAGAATTCTAGCTGATACCACAAATTCAAATATCTGAGAGAAGAAGAAAATCGAAAATTCAA
ATACCCTGATCCTACAAATTTTCATCTTTATTTCATTCTTTCTTCCATCATGTGATCCATTTGG
TACATACCAGGTGCAACAAATGGCATAGGAAAGGAGACAGCTAGGGTCCTTGCACTAAGGGGAG
CAGAGGTGATCTTACCAGCAAGGACACTGGAGAGTGGCATGAAGGTGAAACAGAGCCTTGCAGA
GGAAATCCCCAGCTCAAAGCTCCATGTCATGGAGATGGATCTTAGCTCCCTCGACTCCGTTCGC
AGCTTCGCAAAATCGTTCAACTCGTCTTATAGGCATCTGAACGTCCTCATGTATGTGTGAACAG
TTCGGCATCACTGACTGAATTGCAAAGTTTCAGTAATGGAAAATTGTGTTACTGAATTCACTGA
CAAGTCATTTTTTGTTCTGTGTTTCTCTGAAGAAATAATGCAGGGGTAATGTCCTGCCCTTTTG
GACTATCCAAAGATGGGATTGAGCTTCAATTTGCAACGAATCATGTTGGTAAGTATGTTGTATA
GAAGCTTGGCAACCTGAGATACCGATTTCTTGGAGCAAAGCGAAGAGATACCGGATGAATTAAT
CACTTCTGAAATTTTACTTTGTAAACAGGGCATTTCTTGCTGACAAATCTCCTTCTCGACAAGA
TGAAAGCCACGGCTAAAGAGACTGGTTTGCAGGGCAGGATCATAAACGTGTCTTCTATTTCGCA
TCGAGGAAGCGATGGTTCATGCTTTGATCTAGATAAGCTGAACGACAAGTCGAAGTTAGTAATT
TGCATTTGTGTTCTTCAGGCTGACTCAGTACAGCAAATTGAACCAACGTTCTTACTATTTTATA
AAACTAGGAAAGTAGCCCGCGTATACGCGGACATGTTGTGTTCAAGAAATTTATAAGATTGGAA
TATTAACCAGACAGTATATGCTACGCTTCAAATTTCAAAAAAAGTATTTCTCTACGATTGTTTT
TCAATGATATTCTTTGATAATTTTTATAAGCTATTTGTTAGTTTTATACAACAAAATATTTAAT
TCATCCCTATGAGTAATTATCCATCCAGTTATCGAGAAAGAAAGTAGACTTATTTTTGTTAAGA
AAACATGTTTAATAAATTAAATTCAAATTAAAATTGAAGTGTTATTAACAAAACAAACATTATA
CACTGATGATTTGATTCATCTTCACCTTGGCAAATCAGTATTGCTGCGACACTCGTAATGACCT
TGGTAAATCACCTTAGCTGTCTTAGGTGTGGTGGTTCATCTCGGATGTTTTGCTTTTCTCTCAG
AATTTCTTGGATTTTTCAAAATTTATTAGAGCGCCACGTTGTAGTTTAGGAGCATTTGTAGGAA
GTTTAATAGACTTTTAGTACTGCCTCTGTCCTAGAATGTAACAACCTAGGATAGGATGAGACCC
ATCCTATATTCTGGGACGTAAAGAGTATATGATAGATAGATAGATAGATATATTATTATGAAAT
TTACTCTTTTTATTTATATAATGAGTTGCTAGCTACAAAATAGGGAGGAGAAAGTGAGCAAGGA
GAGAGGAGCGAAGATCATATATATGTTATTAATTTAATATTTAATTACTTTTTATTTTTCATGT
AAAAGATAGGATTTTTTTTCCAAAAGATATATTCTTGTATATCCAAACATGGCCAATGTAGATA
AATAAAATATAATGTAAAAATTATAATCATTTAGAGAATTTACTTTTATTTACATATTGAATTT
TGCTAGGTAGAAAATTGGTAGATTGAATGGAAAATGGCAAGACAAAAGGAAGTACAGGAGAGGA
AGAGACGTACGTACGTACGTACGTACGTCAGGGGAGAGGAGGTCTCGTACGTACTTGAGGGCCA
CCTGAGAGGTGATGGGTTAGGGGTGGGAGGAGATTATGGATTGGGTTTTAGGATTTTTTTTTTA
AGATAAGATCTAATGGTGAAGAATAATAGGTCTACCATCTTAAGTGAAAATTAACGGTCGGATG
TTTTGCTTTTTTTTTAGAATTTCTTGGATTTCTCTAATTTATTAGAGCGCCACGTGGCGGCTTG
GAAGCGTTTGTAGGAAGTTTAATGGATATATAATAGATATATTTTCAGGTACCGTCCGTTCAAG
GCATATGGACATTCCAAATTAGCGAATATTCTCCATGCAAATGAACTATCCAGGCGTTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021