Plant Circular RNA Database

Detail information of Zm00001d024998_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d024998_circ_g.1
					

						ID in PlantcircBase
						zma_circ_010261
					

						Alias
						zma_circ_0000209
					

						Organism
						
							Zea mays						
					

						Position
						
							chr10: 98560566-98560868  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						find_circ
					

						Parent gene
						
							Zm00001d024998						
					

						Parent gene annotation
						
							 acetyl-coenzyme A carboxylase1
							
					

						Parent gene strand
						+
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d024998_T073:1
Zm00001d024998_T003:1
Zm00001d024998_T088:1
Zm00001d024998_T104:1
Zm00001d024998_T145:1
Zm00001d024998_T106:1
Zm00001d024998_T124:1
Zm00001d024998_T075:1
Zm00001d024998_T117:1
Zm00001d024998_T049:1
Zm00001d024998_T083:1
Zm00001d024998_T050:1
Zm00001d024998_T113:1
Zm00001d024998_T139:1
Zm00001d024998_T129:1
Zm00001d024998_T041:1
Zm00001d024998_T072:1
Zm00001d024998_T008:1
Zm00001d024998_T014:1
Zm00001d024998_T022:1
Zm00001d024998_T046:1
Zm00001d024998_T054:1
Zm00001d024998_T140:1
Zm00001d024998_T007:1
Zm00001d024998_T081:1
Zm00001d024998_T090:1
Zm00001d024998_T137:1
Zm00001d024998_T065:1
Zm00001d024998_T094:1
Zm00001d024998_T110:1
Zm00001d024998_T092:1
Zm00001d024998_T119:1
Zm00001d024998_T144:1
Zm00001d024998_T018:1
Zm00001d024998_T143:1
Zm00001d024998_T086:1
Zm00001d024998_T093:1
Zm00001d024998_T118:1
Zm00001d024998_T121:1
Zm00001d024998_T061:1
Zm00001d024998_T012:1
Zm00001d024998_T138:1
Zm00001d024998_T126:1
Zm00001d024998_T025:1
Zm00001d024998_T013:1
Zm00001d024998_T002:1
Zm00001d024998_T016:1
Zm00001d024998_T141:1
Zm00001d024998_T091:1
Zm00001d024998_T044:1
Zm00001d024998_T020:1
Zm00001d024998_T026:1
Zm00001d024998_T128:1
Zm00001d024998_T116:1
Zm00001d024998_T114:1
Zm00001d024998_T070:1
Zm00001d024998_T052:1
Zm00001d024998_T078:1
Zm00001d024998_T084:1
Zm00001d024998_T009:1
Zm00001d024998_T068:1
Zm00001d024998_T098:1
Zm00001d024998_T087:1
Zm00001d024998_T048:1
Zm00001d024998_T005:1
Zm00001d024998_T035:1
Zm00001d024998_T147:1
Zm00001d024998_T040:1
Zm00001d024998_T101:1
Zm00001d024998_T030:1
Zm00001d024998_T134:1
Zm00001d024998_T004:1
Zm00001d024998_T097:1
Zm00001d024998_T099:1
Zm00001d024998_T103:1
Zm00001d024998_T132:1
Zm00001d024998_T136:1
Zm00001d024998_T095:1
Zm00001d024998_T017:1
Zm00001d024998_T038:1
Zm00001d024998_T039:1
Zm00001d024998_T063:1
Zm00001d024998_T001:1
Zm00001d024998_T111:1
Zm00001d024998_T028:1
Zm00001d024998_T006:1
Zm00001d024998_T010:1
Zm00001d024998_T131:1
Zm00001d024998_T085:1
Zm00001d024998_T082:1
Zm00001d024998_T079:1
Zm00001d024998_T108:1
Zm00001d024998_T133:1
Zm00001d024998_T059:1
Zm00001d024998_T055:1
Zm00001d024998_T142:1
Zm00001d024998_T053:1
Zm00001d024998_T146:1
Zm00001d024998_T148:1
Zm00001d024998_T027:1
Zm00001d024998_T100:1
Zm00001d024998_T089:1

					

			
		

General Information
CircRNA Name	Zm00001d024998_circ_g.1
ID in PlantcircBase	zma_circ_010261
Alias	zma_circ_0000209
Organism	Zea mays
Position	chr10: 98560566-98560868 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d024998
Parent gene annotation	acetyl-coenzyme A carboxylase1
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d024998_T073:1 Zm00001d024998_T003:1 Zm00001d024998_T088:1 Zm00001d024998_T104:1 Zm00001d024998_T145:1 Zm00001d024998_T106:1 Zm00001d024998_T124:1 Zm00001d024998_T075:1 Zm00001d024998_T117:1 Zm00001d024998_T049:1 Zm00001d024998_T083:1 Zm00001d024998_T050:1 Zm00001d024998_T113:1 Zm00001d024998_T139:1 Zm00001d024998_T129:1 Zm00001d024998_T041:1 Zm00001d024998_T072:1 Zm00001d024998_T008:1 Zm00001d024998_T014:1 Zm00001d024998_T022:1 Zm00001d024998_T046:1 Zm00001d024998_T054:1 Zm00001d024998_T140:1 Zm00001d024998_T007:1 Zm00001d024998_T081:1 Zm00001d024998_T090:1 Zm00001d024998_T137:1 Zm00001d024998_T065:1 Zm00001d024998_T094:1 Zm00001d024998_T110:1 Zm00001d024998_T092:1 Zm00001d024998_T119:1 Zm00001d024998_T144:1 Zm00001d024998_T018:1 Zm00001d024998_T143:1 Zm00001d024998_T086:1 Zm00001d024998_T093:1 Zm00001d024998_T118:1 Zm00001d024998_T121:1 Zm00001d024998_T061:1 Zm00001d024998_T012:1 Zm00001d024998_T138:1 Zm00001d024998_T126:1 Zm00001d024998_T025:1 Zm00001d024998_T013:1 Zm00001d024998_T002:1 Zm00001d024998_T016:1 Zm00001d024998_T141:1 Zm00001d024998_T091:1 Zm00001d024998_T044:1 Zm00001d024998_T020:1 Zm00001d024998_T026:1 Zm00001d024998_T128:1 Zm00001d024998_T116:1 Zm00001d024998_T114:1 Zm00001d024998_T070:1 Zm00001d024998_T052:1 Zm00001d024998_T078:1 Zm00001d024998_T084:1 Zm00001d024998_T009:1 Zm00001d024998_T068:1 Zm00001d024998_T098:1 Zm00001d024998_T087:1 Zm00001d024998_T048:1 Zm00001d024998_T005:1 Zm00001d024998_T035:1 Zm00001d024998_T147:1 Zm00001d024998_T040:1 Zm00001d024998_T101:1 Zm00001d024998_T030:1 Zm00001d024998_T134:1 Zm00001d024998_T004:1 Zm00001d024998_T097:1 Zm00001d024998_T099:1 Zm00001d024998_T103:1 Zm00001d024998_T132:1 Zm00001d024998_T136:1 Zm00001d024998_T095:1 Zm00001d024998_T017:1 Zm00001d024998_T038:1 Zm00001d024998_T039:1 Zm00001d024998_T063:1 Zm00001d024998_T001:1 Zm00001d024998_T111:1 Zm00001d024998_T028:1 Zm00001d024998_T006:1 Zm00001d024998_T010:1 Zm00001d024998_T131:1 Zm00001d024998_T085:1 Zm00001d024998_T082:1 Zm00001d024998_T079:1 Zm00001d024998_T108:1 Zm00001d024998_T133:1 Zm00001d024998_T059:1 Zm00001d024998_T055:1 Zm00001d024998_T142:1 Zm00001d024998_T053:1 Zm00001d024998_T146:1 Zm00001d024998_T148:1 Zm00001d024998_T027:1 Zm00001d024998_T100:1 Zm00001d024998_T089:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GCTTGCGAAAGGAAGCTTCCCCTTATATACTTGGCAGCAAACTCTGGTGCTAGGATTGGCATAG
CTGATGAAGTGAAATCTTGCTTCCGTGTTGGGTGGTatgggtcctggggcactcctataattcc
catggaacgtcctgctgggctcaatgacattggtatggtcgcttggatcttggaaatgtcaaca
cctgaatt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							ATGGGTCCTGGGGCACTCCTATAATTCCCATGGAACGTCCTGCTGGGCTCAATGACATTGGTAT
GGTCGCTTGGATCTTGGAAATGTCAACACCTGAATTTCCCAATGGCAGGCAGATTATTGTTGTA
GCAAATGATATTACTTTCAGAGCTGGATCATTCGGCCCAAGGGAAGATGCATTTTTTGAAGCTG
TCACCAACCTGGCTTGCGAAAGGAAGCTTCCCCTTATATACTTGGCAGCAAACTCTGGTGCTAG
GATTGGCATAGCTGATGAAGTGAAATCTTGCTTCCGTGTTGGGTGGT

Sequences
Splice junction sequence	GCTTGCGAAAGGAAGCTTCCCCTTATATACTTGGCAGCAAACTCTGGTGCTAGGATTGGCATAG CTGATGAAGTGAAATCTTGCTTCCGTGTTGGGTGGTatgggtcctggggcactcctataattcc catggaacgtcctgctgggctcaatgacattggtatggtcgcttggatcttggaaatgtcaaca cctgaatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGGGTCCTGGGGCACTCCTATAATTCCCATGGAACGTCCTGCTGGGCTCAATGACATTGGTAT GGTCGCTTGGATCTTGGAAATGTCAACACCTGAATTTCCCAATGGCAGGCAGATTATTGTTGTA GCAAATGATATTACTTTCAGAGCTGGATCATTCGGCCCAAGGGAAGATGCATTTTTTGAAGCTG TCACCAACCTGGCTTGCGAAAGGAAGCTTCCCCTTATATACTTGGCAGCAAACTCTGGTGCTAG GATTGGCATAGCTGATGAAGTGAAATCTTGCTTCCGTGTTGGGTGGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.36502995

Conservation Information
Conserved circRNAs	NA
PMCS	0.36502995

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

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Detail information of Zm00001d024998_circ_g.1

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