Detail information of Os01g0538000_circ_g.1


General Information
CircRNA Name Os01g0538000_circ_g.1
ID in PlantcircBase osa_circ_002068
Alias Os_ciR3257
Organism Oryza sativa
Position chr1: 19683365-19684887  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0538000
Parent gene annotation Conserved hypothetical protein. (Os01t0538000-01);Similar to cDN
A, clone: J065161O13, full insert sequence. (Os01t0538000-02);Si
milar to cDNA, clone: J065161O13, full insert sequence. (Os01t05
38000-03);Similar to cDNA, clone: J065161O13, full insert sequen
ce. (Os01t0538000-04)
Parent gene strand +
Alternative splicing Os01g0538000_circ_g.2 Os01g0538000_circ_g.3
Support reads 3/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0538000-03:3
Os01t0538000-01:4
Os01t0538000-02:3
Os01t0538000-04:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGGAGAGACGTCTGAAGGCGGAGTTCAAGAAAGTGAATGAGCAGCAATCTGACTTGGGGGTT
GGATATGCGAACTACCAGTCTCCTTACCAGGCATAAacagttcgcatttggcaagagagcgagg
gtggaaaatataattgcatccacacattgaaagatcatactgctgaggttagtattcatatgat
ctcacttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 640
Transcript exons: 19683365-19683439,19684092-19684288,19684450-19684529,19
684600-19684887
ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACACATTGAAAGATC
ATACTGCTGAGGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCGG
GGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATCAAGCTCATCAAGTTCAA
TTTCGTTTACACAAGCAAACATCCCTTAAAGAAGCAACAGAAATAAAGATGATGATCCAAACTG
GAAGGCATGGATTCAGACGATCAGATTCCACATATTGGACCTGAAGTTCACCACAGGAACCGTG
GAGTGCAACAAATGCTCTACCCAAACCCTCCATTCCCGATCGATCCTGATTATGAGTTTGGTAC
TCCGCAACAACGAGTCCCATATCAAGCGGCATACACTACAGATGCAGAGAGAAATGACGCAGTT
TCTCGTGACAAGCGTGCTCAGAGGGCGGTTTGGAATACTAATCTCCGTCTTCTAGAGGTGAAGA
AATCCGCCCTGGAGAAGAAGAAGACTGAGCTGGAGAGACGTCTGAAGGCGGAGTTCAAGAAAGT
GAATGAGCAGCAATCTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA

Transcript length: 801
Transcript exons: 19683365-19683439,19684092-19684529,19684600-19684887
ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACACATTGAAAGATC
ATACTGCTGAGGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCGG
GGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATCAAGCTCATCAAGTTCAA
TTTCGTTTACACAAGCAAACATCCCTTAAAGAAGCAACAGAAATAAAGATGATGATCCAAACTG
GAAGGCATGGATTCAGGTTGGTTAACCCTGAGCTTTTAGATTGTAAGTTTGATGCCAGGGTTAA
GCTAGAGGAGTGGTACAATACCATGCTCGACGCATGCATGGCACAGTGTGATCATGAGCTGTTC
TCGCTTGAAGCTAGCATTGCGGAGCTAAAGGATCTCATGCTTTCCACAGACGATCAGATTCCAC
ATATTGGACCTGAAGTTCACCACAGGAACCGTGGAGTGCAACAAATGCTCTACCCAAACCCTCC
ATTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCATATCAAGCGGCA
TACACTACAGATGCAGAGAGAAATGACGCAGTTTCTCGTGACAAGCGTGCTCAGAGGGCGGTTT
GGAATACTAATCTCCGTCTTCTAGAGGTGAAGAAATCCGCCCTGGAGAAGAAGAAGACTGAGCT
GGAGAGACGTCTGAAGGCGGAGTTCAAGAAAGTGAATGAGCAGCAATCTGACTTGGGGGTTGGA
TATGCGAACTACCAGTCTCCTTACCAGGCATAA

Genomic sequence ACAGTTCGCATTTGGCAAGAGAGCGAGGGTGGAAAATATAATTGCATCCACACATTGAAAGATC
ATACTGCTGAGGTTAGTATTCATATGATCTCACTTCTATATTGATCTTTATTTCATTTCATTAC
TGGTGAACATCTGCAGCAACTGAAGAGCAAATTGCATTGAAGCTCATCTGTGTGCACCAAGCCT
TGAAATAAATTTGCTATCTATTTTTTTGCTGAAAAATAGTATAGAAGTTTATAGTTGTGCACTT
GTGCTAGAAGTAGGATGTTGAATTGTGATGAACTAACTGCGGCAATCTGCAGATACCTGATCAG
TAGTAGGTACTAGGTAGAAGAATGTACCTTTATATCCTCCGGCTCCCATTTTGTTGCATGCATG
ATTCCTGGCCTATTTCAGTGTTCTAGCAAGTAGCATGACAGGGATAGGATAGGCACTTCATATG
CTATTCTAAAATGTATACATCTGAACTATACGGTAGTATATTATCTTGGCAACATTTTTTGTTG
TGCTGTGCTGTACAAATTCTTTCAAGTTTCCTGTGTTGTAGTCATGCCCAAGACACTTTTTGAG
GCATAGCTGTTAGAGACCAAATGGAAGCTGAATTGGATTAGTCTGTCCAAATGGAAGCTGAATT
GGATTAGTCTGTCTTCTACTGGTCTTTAGCTGCTATAAATCAGTAAAATTAAATAATAAATTAG
TCTGTTTTCTACTTGTCTTACAGGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGT
CTCCAGCCTCGGGGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATCAAGCT
CATCAAGTTCAATTTCGTTTACACAAGCAAACATCCCTTAAAGAAGCAACAGAAATAAAGATGA
TGATCCAAACTGGAAGGCATGGATTCAGGTTGGTTAACCCTGAGCTTTTAGATTGTAAGTTTGA
TGCCAGGGTTAAGCTAGAGGAGTGGTACAATACCATGCTCGACGCATGCATGGCACAGTGTGAT
CATGAGCTGTTCTCGCTTGAAGCTAGCATTGCGGAGCTAAAGGATCTCATGCTTTCCACAGACG
ATCAGATTCCACATATTGGACCTGAAGTTCACCACAGGAACCGTGGAGTGCAACAAATGCTCTA
CCCAAACCCTCCAGTATGTTTATTTTTGTTCTTTTTTTTATGGTGAATTTCTCATTTTTTCTGA
ATACATTTTTTTTTCTCAGTTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGA
GTCCCATATCAAGCGGCATACACTACAGATGCAGAGAGAAATGACGCAGTTTCTCGTGACAAGC
GTGCTCAGAGGGCGGTTTGGAATACTAATCTCCGTCTTCTAGAGGTGAAGAAATCCGCCCTGGA
GAAGAAGAAGACTGAGCTGGAGAGACGTCTGAAGGCGGAGTTCAAGAAAGTGAATGAGCAGCAA
TCTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA
Conservation Information
Conserved circRNAs osi_circ_009957
PMCS 0.311282666
Functional Information
Coding potential Y
Potential coding position 19684827-19683419(+)
19684201-19684749(-)
19684106-19684816(-)
Potential amino acid sequence MSSNLTWGLDMRTTSLLTRHKQFAFGKRARVENIIASTH*(+)
MSLINRIDTHLLQGTVDLPEAGDGSDVSHGGEWRNILSSMIFQCVDAIIFSTLALLPNANCLCL
VRRLVVRISNPQVRLLLIHFLELRLQTSLQLSLLLLQGGFLHL*(-)
MAEYPQQYDLSMCGCNYIFHPRSLAKCELFMPGKETGSSHIQPPSQIAAHSLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017