Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d015513_circ_g.1 |
ID in PlantcircBase | zma_circ_008627 |
Alias | zma_circ_0002256 |
Organism | Zea mays |
Position | chr5: 94711104-94711762 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d015513 |
Parent gene annotation |
Dihydroflavonol-4-reductase |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d015513_T001:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.200655268 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
94711207-94711530(+) 94711215-94711752(-) |
Potential amino acid sequence |
MYMDPRRDPDAPLGDSSWSDLEYCKSTENWYCYAKTVAEQGAWEAARARGLDLAVVIPVVVLGE LLQPSMNTSTLHILKYLTGQTKEYVNESHAYVHVRDAAEAHVRVLEAPGAGGRRYVCAERTLHR GELCRILAGLFPEYPIPTRRRSSSRLSPGRGTSWRRRRTPACGAWCCPPPSAPCTWTRAATPTP RSATPAGATSSTARAPRTGTATQRRWRSRARGRRRGRGGWTWRWSSRWWCSASCCSPV*(+) MYMVPMVEDSTRRRTPASAAASTTFRVPAIIGSMISSLSE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |