Detail information of Os12g0290600_circ_g.2


General Information
CircRNA Name Os12g0290600_circ_g.2
ID in PlantcircBase osa_circ_011169
Alias NA
Organism Oryza sativa
Position chr12: 11225724-11225806  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os12g0290600
Parent gene annotation Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48)
(EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1). (Os12
t0290600-01)
Parent gene strand -
Alternative splicing Os12g0290600_circ_g.1 Os12g0290600_circ_g.3
Support reads 1
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0290600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTCATCTTTTTCTTCGTCTGATTTGACCTTAGCTGCAACtcttttgtttccttatcgaaatg
tatcaccttcaccacaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTTTTGTTTCCTTATCGAAATGTATCACCTTCACCACAAACCATTCATCTTTTTCTTCGTCTG
ATTTGACCTTAGCTGCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.565005321
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017