Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA029512_circ_g.4 |
ID in PlantcircBase | osi_circ_008144 |
Alias | 9:17838224|17845025 |
Organism | Oryza sativa ssp. indica |
Position | chr9: 17838224-17845025 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA029512 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA029512_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA029512-TA:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17844954-17845010(-) 17838239-17845010(-) |
Potential amino acid sequence |
MGPFLETFLGYFDDQEENSPPRTIWKRISEELNVCAQCVCEHHQAQKDFDSEYRSGVDALLKVL RLLDEERVTEHLRQMNAKAQLKEYKPSCHDAEVSIMFEVLMYPILLDDLSLANQFQTFIERIDE IFEVSLSTNQQYPGVYALLFFKSCKARAIGLRLARSMGKLRKAVDLDPLQPLLQKYINFLEAEV LPSTSESPRPRVQLKRADIWLGFKSLYSLEALQDGDHEKQRRNILYFLLHQVTRSSNFSALMRK TATKIALLIVQRGYTMNPPCPASECAHMWGPSLIGSLKDISLHNSLRQPALDLINILIISDASA LISFKMKYESFTKGDVSNSVIFVDDDDELPVFCDAEEMDYGCWNDFNVLYKLTCRECKDWRCVP LLWYLIMVQLEPSELPMAFSKAVFWALSHISVLEPGVSTESSVPVNDWLSSHAGEVLPTFSWQV PNGADDGGVGKECINTLKNLRQVGRAVLELASQGRGLTSGLQFLCSSVSSLTATFLGLRYAVQS VFTLF*(-) MQFNRFSHCFNFLGSLPKEEHIWCGYADIMGPFLETFLGYFDDQEENSPPRTIWKRISEELNVC AQCVCEHHQAQKDFDSEYRSGVDALLKVLRLLDEERVTEHLRQMNAKAQLKEYKPSCHDAEVSI MFEVLMYPILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFFKSCKARAIGLRLAR SMGKLRKAVDLDPLQPLLQKYINFLEAEVLPSTSESPRPRVQLKRADIWLGFKSLYSLEALQDG DHEKQRRNILYFLLHQVTRSSNFSALMRKTATKIALLIVQRGYTMNPPCPASECAHMWGPSLIG SLKDISLHNSLRQPALDLINILIISDASALISFKMKYESFTKGDVSNSVIFVDDDDELPVFCDA EEMDYGCWNDFNVLYKLTCRECKDWRCVPLLWYLIMVQLEPSELPMAFSKAVFWALSHISVLEP GVSTESSVPVNDWLSSHAGEVLPTFSWQVPNGADDGGVGKECINTLKNLRQVGRAVLELASQGR GLTSGLQFLCSSVSSLTATFLGLRYAVQSVFTLF*(-) |
Sponge-miRNAs | osa-miR2919 osa-miR5537 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |