Detail information of BGIOSGA029512_circ_g.4


General Information
CircRNA Name BGIOSGA029512_circ_g.4
ID in PlantcircBase osi_circ_008144
Alias 9:17838224|17845025
Organism Oryza sativa ssp. indica
Position chr9: 17838224-17845025  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA029512
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA029512_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA029512-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGAAGGTCTCCAGAAATGGTCCCATAATATCAGCATATCCACACCAAATATGCTCTTCTTTT
GGCAAACTTCCCAGAAAATTAAAACAATGTGAAAACcgattgaactgcatatcttagacccaaa
aatgtggcagtcagggaagatacactcgagcacagaaattgaagcccagatgtcaaaccccgtc
cttgtgac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17844954-17845010(-)
17838239-17845010(-)
Potential amino acid sequence MGPFLETFLGYFDDQEENSPPRTIWKRISEELNVCAQCVCEHHQAQKDFDSEYRSGVDALLKVL
RLLDEERVTEHLRQMNAKAQLKEYKPSCHDAEVSIMFEVLMYPILLDDLSLANQFQTFIERIDE
IFEVSLSTNQQYPGVYALLFFKSCKARAIGLRLARSMGKLRKAVDLDPLQPLLQKYINFLEAEV
LPSTSESPRPRVQLKRADIWLGFKSLYSLEALQDGDHEKQRRNILYFLLHQVTRSSNFSALMRK
TATKIALLIVQRGYTMNPPCPASECAHMWGPSLIGSLKDISLHNSLRQPALDLINILIISDASA
LISFKMKYESFTKGDVSNSVIFVDDDDELPVFCDAEEMDYGCWNDFNVLYKLTCRECKDWRCVP
LLWYLIMVQLEPSELPMAFSKAVFWALSHISVLEPGVSTESSVPVNDWLSSHAGEVLPTFSWQV
PNGADDGGVGKECINTLKNLRQVGRAVLELASQGRGLTSGLQFLCSSVSSLTATFLGLRYAVQS
VFTLF*(-)
MQFNRFSHCFNFLGSLPKEEHIWCGYADIMGPFLETFLGYFDDQEENSPPRTIWKRISEELNVC
AQCVCEHHQAQKDFDSEYRSGVDALLKVLRLLDEERVTEHLRQMNAKAQLKEYKPSCHDAEVSI
MFEVLMYPILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFFKSCKARAIGLRLAR
SMGKLRKAVDLDPLQPLLQKYINFLEAEVLPSTSESPRPRVQLKRADIWLGFKSLYSLEALQDG
DHEKQRRNILYFLLHQVTRSSNFSALMRKTATKIALLIVQRGYTMNPPCPASECAHMWGPSLIG
SLKDISLHNSLRQPALDLINILIISDASALISFKMKYESFTKGDVSNSVIFVDDDDELPVFCDA
EEMDYGCWNDFNVLYKLTCRECKDWRCVPLLWYLIMVQLEPSELPMAFSKAVFWALSHISVLEP
GVSTESSVPVNDWLSSHAGEVLPTFSWQVPNGADDGGVGKECINTLKNLRQVGRAVLELASQGR
GLTSGLQFLCSSVSSLTATFLGLRYAVQSVFTLF*(-)
Sponge-miRNAs osa-miR2919 osa-miR5537
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021