Plant Circular RNA Database

Detail information of Gh_A01G0395_circ_g.1

			
						 General Information
					
						CircRNA Name
						Gh_A01G0395_circ_g.1
					
						ID in PlantcircBase
						ghi_circ_000029
					
						Alias
						A01:6247596|6250892
					
						Organism
						
							Gossypium hirsutum						
					
						Position
						
							chrA01: 6247596-6250892  JBrowse»						
					
						Reference genome
						
							v1.1						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gh_A01G0395						
					
						Parent gene annotation
						
							SIMILAR TO: AT1G53280, Class I glutamine amidotransferase-like s
uperfamily protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Gh_A01G0395_circ_g.2 Gh_A01G0395_circ_g.3 Gh_A01G0395_circ_g.4 A01_circ_ag.5 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gh_A01G0395:6

General Information
CircRNA Name	Gh_A01G0395_circ_g.1
ID in PlantcircBase	ghi_circ_000029
Alias	A01:6247596\|6250892
Organism	Gossypium hirsutum
Position	chrA01: 6247596-6250892 JBrowse»
Reference genome	v1.1
Type	ei-circRNA
Identification method	CIRI
Parent gene	Gh_A01G0395
Parent gene annotation	SIMILAR TO: AT1G53280, Class I glutamine amidotransferase-like s uperfamily protein
Parent gene strand	+
Alternative splicing	Gh_A01G0395_circ_g.2 Gh_A01G0395_circ_g.3 Gh_A01G0395_circ_g.4 A01_circ_ag.5
Support reads	2
Tissues	leaf
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gh_A01G0395:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGACTGCTTGTTGGACGCCAGTAGATGAACTAGTATGAGTGTTTGGTCCTGCCCATGTTACCCT
ATAGCCTGCTATGAGACGATATATGAGATATAAAAGgttttggtgccgatcgccaacgggacgg
agccgatggaagcggtgattacgatcgacgtgattaggagatcgggagctgacgttacggtggc
ttccgtcg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTTTGGTGCCGATCGCCAACGGGACGGAGCCGATGGAAGCGGTGATTACGATCGACGTGATTA
GGAGATCGGGAGCTGACGTTACGGTGGCTTCCGTCGAGAAAGAGCTTCGCGTTGACGCTTGCCA
CGGTGTTAAAATTGTTGCTGATGCTCTCGTCGCTGATTGTAAGAACACCGTTTTCGATCTTATC
GCGCTTCCTGTAAGTAATTATTCCGGTTTTTTTTTCTGTAAACTTCTTTTCTTCAGGCTTTTGG
TGTTGAAGTAAAATGCAGAGTGCAAATATATGAGTGATTACAGCAGTATTTGGTTTAAAATTGA
GACTCAATTGGTATTGCTTTCTAACTTCTGGAAGCCAAAATGAAAAGATCTTTTTATTTTATGG
AAGTAAACTAGTAATTTTCGGAAGCAAAAGAAAAAAAGGCTTTTTTATTATTTTATTTATAGAA
GAAAATAATTTGCATGTGAGTGATGTTTTTAGATCAAAATGGCAAACGCTTATTTTTGTCATTG
GTATATATGTTTTGCTTTTAGGGAGGCATGCCTGGTGCTAGCAACTTTAAAGATTGTGGAGTTC
TTGAAAGTCTTGTGAAAAAGCAGGCTGCAGATGGGCGGCTTTATGCTGCCGTGTGTGCTTCACC
TGCTGTTGCGCTTGGTTCATGGGGTCTATTGAAGGGACTGAAAGTGAGTACTAAATGATAAATA
TTTTAAGCTAATTTATTTCAGAGATCATGGTATGCGTTGTTTTGCTATTTGTAGCTTGTTTTTG
TTTTAGATAATGTTGCATGATTGAAATCGTAATTCATGATTGTTTCTGGCAGGCTACCTGTTAC
CCATCATTTATGGAGCAACTGCAATCATGTGCAACAGCTGTTGAATCAAGAGTTCAGCAGGATG
GCAAAGTTGTGACAAGTCGTGGACCTGGCACTACCATGGAGTTTGCTGTAACACTGGTTGAGCA
ATTGTATGGAAAAGAGAAAGCTGATGAAGTTTCTGGGCCATTGGTATGGGCACTTTTTACTACA
GTAGTTACGTTCTTTTTAGGAAAAAGGAAAAGCAATCAGGCTAATTGGAAGCTCAGTAGATGAT
GTTTCTGATTAATGGCGCCACTATTTACTAAAATGGATCTGGTTATCTTCAGGTGATGCGTCCT
AACCATGGTGATGAGTATACAATAACAGAGCTGAATCCTCTGGAATGGAAATGCAATAATGTTC
CGCAGGTGAGATTTTAGTGTTGTTTTTTCTATCAAGTTTTGTATAATATTTGATGCATAAATCT
TCATTCTTAAGTACATCTCAGTATTCTGAGTGGTTAATGGTGGATTTTCATTCTCCTCCAATAC
TCTGATTAGGGCTCAAAAAGAGTTCCAATTCTTGATTCTAAAGAGTTTCAAGGACACAACGAAT
TTCTAGTTAGAGGAGTTCAGAAAGAACAGTGTGAAGAGAGAGCTGACTTGCATCTGGCAATTTC
TATAGTTCTATTTTCTTCTTTGATTCTGAAAGTAGCGATTAAAGTCCAAGATATGCAAGAACAC
TTGCTTGCTAAGTTTAGCTGCTTTTCATCACTGTTGATCTTATTTGTAATCTAGTGTCCCAACT
GCCAAAGCATGCTGTACTCTCTAGATCCAGGTTTGCACTTCAAATTGTCCTTGATATTTCTGCT
TTTGTTTTAACTTGATGTAAGGAACAATGGCAATTGTTTTGGTACCAGGACCACTGGACCAAGG
TGGTTGTTTCTAAATCTAGCAGGCTTCTGTGAGGGTCGAGAATTTTGTTATAAATCAATAAATT
GAAAATAGGCTGCCTGAATTTGATATGTCATTAGCTGCTAACTTGATCTTGTTACAGCCCTTCT
TACTCCTATTTCTGCTTTCCCTCCCTTAGGTGAAATGAAAAAGCAAGTTATTATCATGTAATTA
CTAGATAATATGTAAGTTGATGTCTGCAAGAAGATAGTTATCTTTATTTCCAAATTTTCATTTC
TTTCCTAAAATGATTCTATGCAGTCAGTTGGTAAGTTCACTCAGATACTGATTTTCAACTTACA
AGTATTCTGGCATTTAAATTTGTCTTAGTACTATCACCCAAAATTTATGGTTCTTTTCTATGAT
AAAGTTTGTGTTTGATTAAATTTTCAGGTTCTTGTACCAATTGCTGATGGCTCAGAAGAAATGG
AAGCAGTTATGATCATTGACATTCTGCGTCGAGCAAAGGCAAATGTTGTGGTGGCCTCTGTTGG
AGACAATCTTGAAATTCTGGCTTCTAGGAAAGTTAAATTAGTGGCAGATATGCTTCTTGATGAA
GCTGCTAAACTTACATATGACCTTATAGTCTTGCCAGTATGTTGGAATTCTGTCGTATTCCCTA
GTCCTAATTCCTCCCAATTTTCCTTCTTTGTAATATATTTTAACTTGGTCTTTGATAACTACAG
GGAGGACTTGGTGGTGCCCAAGCATTTGCTAAATCTGATAAGCTGGTGAACTTGTTAAAGAAGC
AAGCGGAATCAAACAAACCCTATGGAGCTATATGTGCATCTCCAGCTTTGGTGCTGGAGCCTCA
TGGTTTACTCAAGGTATAATCTTGATCGAGTTTTAACATTTTCGTGTTTTCATTATAAAATTTG
CATTGGTTTGTACTTGTTTATTTTGTTCATAAAATAAATGATCAACTTAATTAAAAGAACCATA
ATCTGCCTCTGGGAATTAGTCTCTTCGTCTCTGGAGGCTTTTGATTAAATAATTTCAACTTATA
ATTAGGCAATATGGTCACTACAAAATACAAACTGTTTAGGTTGTATCATTTGCTTTTGCCTTTA
AACTTTGAACTTTCACTATTGTGCGTACACTTGCTTTTATTTTTTGATTACAAGTGACAAGTTT
GTGTGTGTGGTTCCTGTAATTATATTTGTTTCAAAAATTTTGATCTCGAGTGAAAAAAACAATC
AGCACTCAAAAGAAATTTTCTGTATTTGATATTCACGGATGGTTAACAGTCGTGTTGTGCTATG
GTCCAGGGCAAAAAGGCCACAGCTTACCCTGCAATGTGCGACAAGCTATCAGATCAAAGTCATA
TTGACAACAGAGTAGTGGTGGATGGCAACCTCATTACAAGCAGGGGACCTGGAACTGCCATGGA
GTTTGCACTAGGAATTGTGGAGAAGTTTTTCGGGCGCCCGAAAGCCTTAGAGCTAGCAAAAGGA
CTGCTTGTTGGACGCCAGTAGATGAACTAGTATGAGTGTTTGGTCCTGCCCATGTTACCCTATA
GCCTGCTATGAGACGATATATGAGATATAAAAG
						
					

			
		

Sequences
Splice junction sequence	GGACTGCTTGTTGGACGCCAGTAGATGAACTAGTATGAGTGTTTGGTCCTGCCCATGTTACCCT ATAGCCTGCTATGAGACGATATATGAGATATAAAAGgttttggtgccgatcgccaacgggacgg agccgatggaagcggtgattacgatcgacgtgattaggagatcgggagctgacgttacggtggc ttccgtcg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTTTGGTGCCGATCGCCAACGGGACGGAGCCGATGGAAGCGGTGATTACGATCGACGTGATTA GGAGATCGGGAGCTGACGTTACGGTGGCTTCCGTCGAGAAAGAGCTTCGCGTTGACGCTTGCCA CGGTGTTAAAATTGTTGCTGATGCTCTCGTCGCTGATTGTAAGAACACCGTTTTCGATCTTATC GCGCTTCCTGTAAGTAATTATTCCGGTTTTTTTTTCTGTAAACTTCTTTTCTTCAGGCTTTTGG TGTTGAAGTAAAATGCAGAGTGCAAATATATGAGTGATTACAGCAGTATTTGGTTTAAAATTGA GACTCAATTGGTATTGCTTTCTAACTTCTGGAAGCCAAAATGAAAAGATCTTTTTATTTTATGG AAGTAAACTAGTAATTTTCGGAAGCAAAAGAAAAAAAGGCTTTTTTATTATTTTATTTATAGAA GAAAATAATTTGCATGTGAGTGATGTTTTTAGATCAAAATGGCAAACGCTTATTTTTGTCATTG GTATATATGTTTTGCTTTTAGGGAGGCATGCCTGGTGCTAGCAACTTTAAAGATTGTGGAGTTC TTGAAAGTCTTGTGAAAAAGCAGGCTGCAGATGGGCGGCTTTATGCTGCCGTGTGTGCTTCACC TGCTGTTGCGCTTGGTTCATGGGGTCTATTGAAGGGACTGAAAGTGAGTACTAAATGATAAATA TTTTAAGCTAATTTATTTCAGAGATCATGGTATGCGTTGTTTTGCTATTTGTAGCTTGTTTTTG TTTTAGATAATGTTGCATGATTGAAATCGTAATTCATGATTGTTTCTGGCAGGCTACCTGTTAC CCATCATTTATGGAGCAACTGCAATCATGTGCAACAGCTGTTGAATCAAGAGTTCAGCAGGATG GCAAAGTTGTGACAAGTCGTGGACCTGGCACTACCATGGAGTTTGCTGTAACACTGGTTGAGCA ATTGTATGGAAAAGAGAAAGCTGATGAAGTTTCTGGGCCATTGGTATGGGCACTTTTTACTACA GTAGTTACGTTCTTTTTAGGAAAAAGGAAAAGCAATCAGGCTAATTGGAAGCTCAGTAGATGAT GTTTCTGATTAATGGCGCCACTATTTACTAAAATGGATCTGGTTATCTTCAGGTGATGCGTCCT AACCATGGTGATGAGTATACAATAACAGAGCTGAATCCTCTGGAATGGAAATGCAATAATGTTC CGCAGGTGAGATTTTAGTGTTGTTTTTTCTATCAAGTTTTGTATAATATTTGATGCATAAATCT TCATTCTTAAGTACATCTCAGTATTCTGAGTGGTTAATGGTGGATTTTCATTCTCCTCCAATAC TCTGATTAGGGCTCAAAAAGAGTTCCAATTCTTGATTCTAAAGAGTTTCAAGGACACAACGAAT TTCTAGTTAGAGGAGTTCAGAAAGAACAGTGTGAAGAGAGAGCTGACTTGCATCTGGCAATTTC TATAGTTCTATTTTCTTCTTTGATTCTGAAAGTAGCGATTAAAGTCCAAGATATGCAAGAACAC TTGCTTGCTAAGTTTAGCTGCTTTTCATCACTGTTGATCTTATTTGTAATCTAGTGTCCCAACT GCCAAAGCATGCTGTACTCTCTAGATCCAGGTTTGCACTTCAAATTGTCCTTGATATTTCTGCT TTTGTTTTAACTTGATGTAAGGAACAATGGCAATTGTTTTGGTACCAGGACCACTGGACCAAGG TGGTTGTTTCTAAATCTAGCAGGCTTCTGTGAGGGTCGAGAATTTTGTTATAAATCAATAAATT GAAAATAGGCTGCCTGAATTTGATATGTCATTAGCTGCTAACTTGATCTTGTTACAGCCCTTCT TACTCCTATTTCTGCTTTCCCTCCCTTAGGTGAAATGAAAAAGCAAGTTATTATCATGTAATTA CTAGATAATATGTAAGTTGATGTCTGCAAGAAGATAGTTATCTTTATTTCCAAATTTTCATTTC TTTCCTAAAATGATTCTATGCAGTCAGTTGGTAAGTTCACTCAGATACTGATTTTCAACTTACA AGTATTCTGGCATTTAAATTTGTCTTAGTACTATCACCCAAAATTTATGGTTCTTTTCTATGAT AAAGTTTGTGTTTGATTAAATTTTCAGGTTCTTGTACCAATTGCTGATGGCTCAGAAGAAATGG AAGCAGTTATGATCATTGACATTCTGCGTCGAGCAAAGGCAAATGTTGTGGTGGCCTCTGTTGG AGACAATCTTGAAATTCTGGCTTCTAGGAAAGTTAAATTAGTGGCAGATATGCTTCTTGATGAA GCTGCTAAACTTACATATGACCTTATAGTCTTGCCAGTATGTTGGAATTCTGTCGTATTCCCTA GTCCTAATTCCTCCCAATTTTCCTTCTTTGTAATATATTTTAACTTGGTCTTTGATAACTACAG GGAGGACTTGGTGGTGCCCAAGCATTTGCTAAATCTGATAAGCTGGTGAACTTGTTAAAGAAGC AAGCGGAATCAAACAAACCCTATGGAGCTATATGTGCATCTCCAGCTTTGGTGCTGGAGCCTCA TGGTTTACTCAAGGTATAATCTTGATCGAGTTTTAACATTTTCGTGTTTTCATTATAAAATTTG CATTGGTTTGTACTTGTTTATTTTGTTCATAAAATAAATGATCAACTTAATTAAAAGAACCATA ATCTGCCTCTGGGAATTAGTCTCTTCGTCTCTGGAGGCTTTTGATTAAATAATTTCAACTTATA ATTAGGCAATATGGTCACTACAAAATACAAACTGTTTAGGTTGTATCATTTGCTTTTGCCTTTA AACTTTGAACTTTCACTATTGTGCGTACACTTGCTTTTATTTTTTGATTACAAGTGACAAGTTT GTGTGTGTGGTTCCTGTAATTATATTTGTTTCAAAAATTTTGATCTCGAGTGAAAAAAACAATC AGCACTCAAAAGAAATTTTCTGTATTTGATATTCACGGATGGTTAACAGTCGTGTTGTGCTATG GTCCAGGGCAAAAAGGCCACAGCTTACCCTGCAATGTGCGACAAGCTATCAGATCAAAGTCATA TTGACAACAGAGTAGTGGTGGATGGCAACCTCATTACAAGCAGGGGACCTGGAACTGCCATGGA GTTTGCACTAGGAATTGTGGAGAAGTTTTTCGGGCGCCCGAAAGCCTTAGAGCTAGCAAAAGGA CTGCTTGTTGGACGCCAGTAGATGAACTAGTATGAGTGTTTGGTCCTGCCCATGTTACCCTATA GCCTGCTATGAGACGATATATGAGATATAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of Gh_A01G0395_circ_g.1

Address

Any questions?

Supported by