Plant Circular RNA Database

Detail information of Os02g0194600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0194600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_013615
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 5273889-5275968  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0194600						
					
						Parent gene annotation
						
							Protein kinase, catalytic domain domain containing protein. (Os0
2t0194600-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0194600-00:5

General Information
CircRNA Name	Os02g0194600_circ_g.1
ID in PlantcircBase	osa_circ_013615
Alias	NA
Organism	Oryza sativa
Position	chr2: 5273889-5275968 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0194600
Parent gene annotation	Protein kinase, catalytic domain domain containing protein. (Os0 2t0194600-00)
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0194600-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTCTTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGGAACCCTCTTTCA
AAACAACCAGACCGTATTTCGAGCCATCCTTTACAGctcctggctatcaagaagatcaacatgg
tagatctgtcattatcggaacaagatgagctcatagacatgcttgggaaaatgtccaatttgaa
gcacccca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 880
Transcript exons: 5273889-5274160,5274336-5274477,5275177-5275316,5275384-
5275540,5275800-5275968
CTCCTGGCTATCAAGAAGATCAACATGGTAGATCTGTCATTATCGGAACAAGATGAGCTCATAG
ACATGCTTGGGAAAATGTCCAATTTGAAGCACCCCAATATCTCTGCGCTTGTGGGCTACTGTGT
CGAGTTTGGGCACTGTGCACTTCTATATGAATATGCAGAAAATGGCTCTCTTGATGATATTTTG
TTTTCAGCAGCCACAAGGTCCAGGGCTTTGTCATGGAAAGCTCGGATGAAGATTGCTCTTGGAG
TTGCCTATGCTTTGGAATTCATGCATTCGACGTGCTCTCCTCCAGTTGTTCATGGAAATATTAA
AGCGACAAATATTTTGCTCGATGCTCAGCTCATGCCCTACCTCAGCCACTGTGGATTAGCCAGG
CTAAGCCAATTTGTCAGTGCCATAAGAACGGACTCAGAAGCTCTCAACAGTGGTAAAGGCTATG
TTGCACCTGAGCTTACTGACCCAGCAACAGATAGCATCAAGGCTGACATTTACAGTTTCGGTGT
GATTTTGCTCGTGCTTTTGACTGGGCAGAAGGCCTTTGACAGTTCAAGAAGGCAGAATGAGCAG
TTTCTAGTTGATTGGGCATCTCCTCATCTCCATAACCTTGATTCTTTGGAAAGAATAACTGATC
CAAGAATACATGCATCTATGCCACCTCAAGCTATCTCTACGTTAGGCAACATCATCTTACTCTG
CATCAAGAAATCACCAGAGCTCCGTCCGCCAATGACAGTCATAACAGACAAACTACTGAAGCTT
GTCCAGTCGACAGGTCTTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGG
AACCCTCTTTCAAAACAACCAGACCGTATTTCGAGCCATCCTTTACAG
						
					

						Genomic sequence
						
							CTCCTGGCTATCAAGAAGATCAACATGGTAGATCTGTCATTATCGGAACAAGATGAGCTCATAG
ACATGCTTGGGAAAATGTCCAATTTGAAGCACCCCAATATCTCTGCGCTTGTGGGCTACTGTGT
CGAGTTTGGGCACTGTGCACTTCTATATGAATATGCAGAAAATGGCTCTCTTGATGATATTTTG
TTTTCAGCAGCCACAAGGTCCAGGGCTTTGTCATGGAAAGCTCGGATGAAGATTGCTCTTGGAG
TTGCCTATGCTTTGGAGTAAGTACATTTTTGTGGACTTAGATTCCTACCAAATCATCTAGCTGT
TTGTTTTGTACTGCAGGGTATACACATCCTCATAGTGTTAATGGCTTTCTGTAAATTGTTCTGC
TGAACTGATGTCAATTTTTAGACATATACTGGAAGCTTTCCTGAAATTTTGAAGCTTATGCAGA
TTCATGCATTCGACGTGCTCTCCTCCAGTTGTTCATGGAAATATTAAAGCGACAAATATTTTGC
TCGATGCTCAGCTCATGCCCTACCTCAGCCACTGTGGATTAGCCAGGCTAAGCCAATTTGTCAG
TGCCATAAGAACGGTCAGTGCTCACTAGTTTTCCATGTTATATTGGATAGTGTTCTTACTTCTG
TACATAATCATTAGTGATGGTGATATAGTTAATGTTTTACTTGAACAATTCTAGGATCTAATTG
TTGTCATGGATTGCCAATCTCTTGGAGTTCTTACTGCATACTTAACGATAAGGAATTTTAAGTT
TAGACAGAGAAGGATGCATTGAGAAAAAACGATCCATAAAGTTAGCTTTTTAGGGAAAAGGGTT
TGTCCTGTTGATGGTGAGGCTGTTTAACCTCCCCATCTGCTTGGGTTCAAGTCCTAAGACCAAG
GCACCGGGCTGGTGCTTATGTCCTTTGGTGAACGCTATAGCTCTTGAACTATTTTCCAAAAGGA
AGAAAGACTAAATTAATAATAAGCCAGTTTAGACCCATACTTTTGGAATTTTGTCACGATTGCT
TACAGTTGCATCTCAACCAAAATCAAAGGTAGGTCGCTGGATAGACTCCTATACATTATAGTGT
TATATCAAAACAAGCTACTCTCCCTTGAAATATTTGAAAGATGTATATGTGTGTGTCCCTACTA
GGATCAACCGTGGTCCCTTCAGAAGTGGGTAGAAAAATCACACACATATTAAGGGGATACTGGT
GTTTTTCAAAGTCAATGATATATCTTCTGTATAATCCGTTGACCGTTAACAGTTCCTCACCTGA
AAAAACAGGACTCAGAAGCTCTCAACAGTGGTAAAGGCTATGTTGCACCTGAGCTTACTGACCC
AGCAACAGATAGCATCAAGGCTGACATTTACAGTTTCGGTGTGATTTTGCTCGTGCTTTTGACT
GGGCAGAAGGCCTTTGACAGGTATATGCTCACTTAATCTTGTACAGCTGTAGTCTGGTTCTCTA
ATGAAGTTCTTTTTCCTCTTCAGTTCAAGAAGGCAGAATGAGCAGTTTCTAGTTGATTGGGCAT
CTCCTCATCTCCATAACCTTGATTCTTTGGAAAGAATAACTGATCCAAGAATACATGCATCTAT
GCCACCTCAAGCTATCTCTACGTTAGGCAACATCATCTTACTCTGCATCAAGGTAACTGTCCGT
TACCTTTTTCTGGTACACATTACTTAGTTGAACTATGCTACCTTGAGGATAGAAGCCAAGCTGC
AAATTGAAACACCGCATGCACTACTCCTTAATGCTTAGACTCTGCTCCTAAATGGGAATTGAAG
GGGATTATAGCTGAAAAATGTCTAATTACTGCGGTCCTAATGATTTATGAATTCATCGAATGAA
TTTCAGCACCCTATATTTGTGATCATTACTGGCTGTATTTCTTCCTTCAATGCAGAAATCACCA
GAGCTCCGTCCGCCAATGACAGTCATAACAGACAAACTACTGAAGCTTGTCCAGTCGACAGGTC
TTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGGAACCCTCTTTCAAAAC
AACCAGACCGTATTTCGAGCCATCCTTTACAG
						
					

			
		

Sequences
Splice junction sequence	GGTCTTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGGAACCCTCTTTCA AAACAACCAGACCGTATTTCGAGCCATCCTTTACAGctcctggctatcaagaagatcaacatgg tagatctgtcattatcggaacaagatgagctcatagacatgcttgggaaaatgtccaatttgaa gcacccca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 880 Transcript exons: 5273889-5274160,5274336-5274477,5275177-5275316,5275384- 5275540,5275800-5275968 CTCCTGGCTATCAAGAAGATCAACATGGTAGATCTGTCATTATCGGAACAAGATGAGCTCATAG ACATGCTTGGGAAAATGTCCAATTTGAAGCACCCCAATATCTCTGCGCTTGTGGGCTACTGTGT CGAGTTTGGGCACTGTGCACTTCTATATGAATATGCAGAAAATGGCTCTCTTGATGATATTTTG TTTTCAGCAGCCACAAGGTCCAGGGCTTTGTCATGGAAAGCTCGGATGAAGATTGCTCTTGGAG TTGCCTATGCTTTGGAATTCATGCATTCGACGTGCTCTCCTCCAGTTGTTCATGGAAATATTAA AGCGACAAATATTTTGCTCGATGCTCAGCTCATGCCCTACCTCAGCCACTGTGGATTAGCCAGG CTAAGCCAATTTGTCAGTGCCATAAGAACGGACTCAGAAGCTCTCAACAGTGGTAAAGGCTATG TTGCACCTGAGCTTACTGACCCAGCAACAGATAGCATCAAGGCTGACATTTACAGTTTCGGTGT GATTTTGCTCGTGCTTTTGACTGGGCAGAAGGCCTTTGACAGTTCAAGAAGGCAGAATGAGCAG TTTCTAGTTGATTGGGCATCTCCTCATCTCCATAACCTTGATTCTTTGGAAAGAATAACTGATC CAAGAATACATGCATCTATGCCACCTCAAGCTATCTCTACGTTAGGCAACATCATCTTACTCTG CATCAAGAAATCACCAGAGCTCCGTCCGCCAATGACAGTCATAACAGACAAACTACTGAAGCTT GTCCAGTCGACAGGTCTTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGG AACCCTCTTTCAAAACAACCAGACCGTATTTCGAGCCATCCTTTACAG
Genomic sequence	CTCCTGGCTATCAAGAAGATCAACATGGTAGATCTGTCATTATCGGAACAAGATGAGCTCATAG ACATGCTTGGGAAAATGTCCAATTTGAAGCACCCCAATATCTCTGCGCTTGTGGGCTACTGTGT CGAGTTTGGGCACTGTGCACTTCTATATGAATATGCAGAAAATGGCTCTCTTGATGATATTTTG TTTTCAGCAGCCACAAGGTCCAGGGCTTTGTCATGGAAAGCTCGGATGAAGATTGCTCTTGGAG TTGCCTATGCTTTGGAGTAAGTACATTTTTGTGGACTTAGATTCCTACCAAATCATCTAGCTGT TTGTTTTGTACTGCAGGGTATACACATCCTCATAGTGTTAATGGCTTTCTGTAAATTGTTCTGC TGAACTGATGTCAATTTTTAGACATATACTGGAAGCTTTCCTGAAATTTTGAAGCTTATGCAGA TTCATGCATTCGACGTGCTCTCCTCCAGTTGTTCATGGAAATATTAAAGCGACAAATATTTTGC TCGATGCTCAGCTCATGCCCTACCTCAGCCACTGTGGATTAGCCAGGCTAAGCCAATTTGTCAG TGCCATAAGAACGGTCAGTGCTCACTAGTTTTCCATGTTATATTGGATAGTGTTCTTACTTCTG TACATAATCATTAGTGATGGTGATATAGTTAATGTTTTACTTGAACAATTCTAGGATCTAATTG TTGTCATGGATTGCCAATCTCTTGGAGTTCTTACTGCATACTTAACGATAAGGAATTTTAAGTT TAGACAGAGAAGGATGCATTGAGAAAAAACGATCCATAAAGTTAGCTTTTTAGGGAAAAGGGTT TGTCCTGTTGATGGTGAGGCTGTTTAACCTCCCCATCTGCTTGGGTTCAAGTCCTAAGACCAAG GCACCGGGCTGGTGCTTATGTCCTTTGGTGAACGCTATAGCTCTTGAACTATTTTCCAAAAGGA AGAAAGACTAAATTAATAATAAGCCAGTTTAGACCCATACTTTTGGAATTTTGTCACGATTGCT TACAGTTGCATCTCAACCAAAATCAAAGGTAGGTCGCTGGATAGACTCCTATACATTATAGTGT TATATCAAAACAAGCTACTCTCCCTTGAAATATTTGAAAGATGTATATGTGTGTGTCCCTACTA GGATCAACCGTGGTCCCTTCAGAAGTGGGTAGAAAAATCACACACATATTAAGGGGATACTGGT GTTTTTCAAAGTCAATGATATATCTTCTGTATAATCCGTTGACCGTTAACAGTTCCTCACCTGA AAAAACAGGACTCAGAAGCTCTCAACAGTGGTAAAGGCTATGTTGCACCTGAGCTTACTGACCC AGCAACAGATAGCATCAAGGCTGACATTTACAGTTTCGGTGTGATTTTGCTCGTGCTTTTGACT GGGCAGAAGGCCTTTGACAGGTATATGCTCACTTAATCTTGTACAGCTGTAGTCTGGTTCTCTA ATGAAGTTCTTTTTCCTCTTCAGTTCAAGAAGGCAGAATGAGCAGTTTCTAGTTGATTGGGCAT CTCCTCATCTCCATAACCTTGATTCTTTGGAAAGAATAACTGATCCAAGAATACATGCATCTAT GCCACCTCAAGCTATCTCTACGTTAGGCAACATCATCTTACTCTGCATCAAGGTAACTGTCCGT TACCTTTTTCTGGTACACATTACTTAGTTGAACTATGCTACCTTGAGGATAGAAGCCAAGCTGC AAATTGAAACACCGCATGCACTACTCCTTAATGCTTAGACTCTGCTCCTAAATGGGAATTGAAG GGGATTATAGCTGAAAAATGTCTAATTACTGCGGTCCTAATGATTTATGAATTCATCGAATGAA TTTCAGCACCCTATATTTGTGATCATTACTGGCTGTATTTCTTCCTTCAATGCAGAAATCACCA GAGCTCCGTCCGCCAATGACAGTCATAACAGACAAACTACTGAAGCTTGTCCAGTCGACAGGTC TTCAAAAGACCAGCACGACGACACAACACTTGGAGGTTGATGCTCAGGAACCCTCTTTCAAAAC AACCAGACCGTATTTCGAGCCATCCTTTACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.129110785

Conservation Information
Conserved circRNAs	NA
PMCS	0.129110785

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5273914-5273941(+)
5275913-5273941(+)
5273958-5275847(-)
						
						Potential amino acid sequence
						
							MVDLSLSEQDELIDMLGKMSNLKHPNISALVGYCVEFGHCALLYEYAENGSLDDILFSAATRSR
ALSWKARMKIALGVAYALEFMHSTCSPPVVHGNIKATNILLDAQLMPYLSHCGLARLSQFVSAI
RTDSEALNSGKGYVAPELTDPATDSIKADIYSFGVILLVLLTGQKAFDSSRRQNEQFLVDWASP
HLHNLDSLERITDPRIHASMPPQAISTLGNIILLCIKKSPELRPPMTVITDKLLKLVQSTGLQK
TSTTTQHLEVDAQEPSFKTTRPYFEPSFTAPGYQEDQHGRSVIIGTR*(+)
MLRNPLSKQPDRISSHPLQLLAIKKINMVDLSLSEQDELIDMLGKMSNLKHPNISALVGYCVEF
GHCALLYEYAENGSLDDILFSAATRSRALSWKARMKIALGVAYALEFMHSTCSPPVVHGNIKAT
NILLDAQLMPYLSHCGLARLSQFVSAIRTDSEALNSGKGYVAPELTDPATDSIKADIYSFGVIL
LVLLTGQKAFDSSRRQNEQFLVDWASPHLHNLDSLERITDPRIHASMPPQAISTLGNIILLCIK
KSPELRPPMTVITDKLLKLVQSTGLQKTSTTTQHLEVDAQEPSFKTTRPYFEPSFTAPGYQEDQ
HGRSVIIGTR*(+)
MSMSSSCSDNDRSTMLIFLIARSCKGWLEIRSGCFERGFLSINLQVLCRRAGLLKTCRLDKLQ*
(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5273914-5273941(+) 5275913-5273941(+) 5273958-5275847(-)
Potential amino acid sequence	MVDLSLSEQDELIDMLGKMSNLKHPNISALVGYCVEFGHCALLYEYAENGSLDDILFSAATRSR ALSWKARMKIALGVAYALEFMHSTCSPPVVHGNIKATNILLDAQLMPYLSHCGLARLSQFVSAI RTDSEALNSGKGYVAPELTDPATDSIKADIYSFGVILLVLLTGQKAFDSSRRQNEQFLVDWASP HLHNLDSLERITDPRIHASMPPQAISTLGNIILLCIKKSPELRPPMTVITDKLLKLVQSTGLQK TSTTTQHLEVDAQEPSFKTTRPYFEPSFTAPGYQEDQHGRSVIIGTR(+) MLRNPLSKQPDRISSHPLQLLAIKKINMVDLSLSEQDELIDMLGKMSNLKHPNISALVGYCVEF GHCALLYEYAENGSLDDILFSAATRSRALSWKARMKIALGVAYALEFMHSTCSPPVVHGNIKAT NILLDAQLMPYLSHCGLARLSQFVSAIRTDSEALNSGKGYVAPELTDPATDSIKADIYSFGVIL LVLLTGQKAFDSSRRQNEQFLVDWASPHLHNLDSLERITDPRIHASMPPQAISTLGNIILLCIK KSPELRPPMTVITDKLLKLVQSTGLQKTSTTTQHLEVDAQEPSFKTTRPYFEPSFTAPGYQEDQ HGRSVIIGTR(+) MSMSSSCSDNDRSTMLIFLIARSCKGWLEIRSGCFERGFLSINLQVLCRRAGLLKTCRLDKLQ* (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0194600_circ_g.1

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