Detail information of AT2G06050_circ_g.1


General Information
CircRNA Name AT2G06050_circ_g.1
ID in PlantcircBase ath_circ_012959
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2359611-2359742  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI-full, circRNA_finder
Parent gene AT2G06050
Parent gene annotation 12-oxophytodienoate reductase 3
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G06050.3:1
AT2G06050.1:1
AT2G06050.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAGTGATCTATAGCCGGAGATACCCTCACACCAACTTTACTAGCTCCTATGGCTGAAACTAC
ACcttgtaacttattgagcatgccaaccacggctagcccgagtgatagtgggtcagaatcagtt
gcgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 132
Transcript exons: 2359611-2359742
CTTGTAACTTATTGAGCATGCCAACCACGGCTAGCCCGAGTGATAGTGGGTCAGAATCAGTTGC
GTCCAAGTGATCTATAGCCGGAGATACCCTCACACCAACTTTACTAGCTCCTATGGCTGAAACT
ACAC

Genomic sequence CTTGTAACTTATTGAGCATGCCAACCACGGCTAGCCCGAGTGATAGTGGGTCAGAATCAGTTGC
GTCCAAGTGATCTATAGCCGGAGATACCCTCACACCAACTTTACTAGCTCCTATGGCTGAAACT
ACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.279113636
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017