Detail information of Os05g0586600_circ_g.2


General Information
CircRNA Name Os05g0586600_circ_g.2
ID in PlantcircBase osa_circ_042202
Alias NA
Organism Oryza sativa
Position chr5: 29225820-29225920  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRI-long
Parent gene Os05g0586600
Parent gene annotation Similar to SIGE (RNA polymerase sigma subunit E); DNA binding /
DNA-directed RNA polymerase/ sigma factor/ transcription factor.
(Os05t0586600-01)
Parent gene strand +
Alternative splicing Os05g0586600_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GC-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCCGTGCTCACCTCCGCCCAGAGCATCCGCCTCTTCAGGATCATGCAcacgccgtgtccac
cgacatgggcagcctcgactggaagcggatgaagatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 101
Transcript exons: 29225820-29225920
CACGCCGTGTCCACCGACATGGGCAGCCTCGACTGGAAGCGGATGAAGATCCCTCCCGTGCTCA
CCTCCGCCCAGAGCATCCGCCTCTTCAGGATCATGCA

Genomic sequence CACGCCGTGTCCACCGACATGGGCAGCCTCGACTGGAAGCGGATGAAGATCCCTCCCGTGCTCA
CCTCCGCCCAGAGCATCCGCCTCTTCAGGATCATGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.2302
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study