Detail information of BGIOSGA012822_circ_igg.2


General Information
CircRNA Name BGIOSGA012822_circ_igg.2
ID in PlantcircBase osi_circ_013117
Alias Chr12:22632322_22632932(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 18035901-18036511  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA012822_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGCGGCCGACCGCGCGTCGTCGGGGAGCCGGCCGGCCGGCGGTGCGTCGAGGAGTCAGGCGG
CTGGCGTTCCATCGATGGGGAGTCGGCGCCGCTCACcttgagcttgaagctgtagttgttggag
cggattcggatccgcctgccggcgacgaggttgtcgacgacgaggttgcaggtcgccttcccgg
tcattttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAGCTTGAAGCTGTAGTTGTTGGAGCGGATTCGGATCCGCCTGCCGGCGACGAGGTTGTCG
ACGACGAGGTTGCAGGTCGCCTTCCCGGTCATTTTCCACAGCTTGATGGTGCCGAACTTGATGC
GGATCGGCACGCGCGCCCACACCGTGAGCGGCACGAACCCGGCCTATTGCTGCTGCAGCAGCTG
CGCCGCCACGGCGCTGTCCAGCCGCGTCTCGCCAGCGACGGCGACGGCGAGGACGAGCACGGCG
AGCAGCGTCCAGCACACGCACCGGCAGCACCGCCGCCCGCGGCTCCTGCGCCGACGCCCACCGG
GTGGATTCGGTGGTAGTCCATTGAGATGGAGACGCTGCTTGCCGGGCGGCTGGCGGCGCGTCGA
TGGGACCCCGGCGACCGGCCGCGCGTCGATGGGGAGGCCGGCGAGCCACCGCGCATCGAGGGGG
AGCCGAGCTCCGGGCCGCGCGTCGTGGGGGAGTCAGGCGGCCGGCCTCGCATCGTCGGGGAGCA
AGGCGGCCGACCGCGCGTCGTCGGGGAGCCGGCCGGCCGGCGGTGCGTCGAGGAGTCAGGCGGC
TGGCGTTCCATCGATGGGGAGTCGGCGCCGCTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021