Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G19715_circ_g.5 |
ID in PlantcircBase | ath_circ_003446 |
Alias | At_ciR1134 |
Organism | Arabidpsis thaliana |
Position | chr1: 6819110-6819313 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ, CIRI-full |
Parent gene | AT1G19715 |
Parent gene annotation |
Jacalin-related lectin 3 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 5/1 |
Tissues | leaf/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G19715.2:1 AT1G19715.1:1 AT1G19715.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.446255657 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6819245-6819112(-) |
Potential amino acid sequence |
MYTTVKQIIIAHGSGIDSIQIEYDKNGSSVWSEKRGGKGGKKFDKSVEGKPASLGPWGGQSGHA WDDGMYTTVKQIIIAHGSGIDSIQIEYDKNGSSVWSEKRGGKGGKKFDKSVEGKPASLGPWGGQ SGHAWDDGMYTTVKQIIIAHGSGIDSIQIEYDKNGSSVWSEKRGGKGGKKFDKSVEGKPASLGP WGGQSGHAWDDGMYTTVKQIIIAHGSGIDSIQIEYDKNGSSVWSEKRGGKGGKKFDK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |