Detail information of BGIOSGA001914_circ_g.1


General Information
CircRNA Name BGIOSGA001914_circ_g.1
ID in PlantcircBase osi_circ_008905
Alias Chr01:9550065_9551676(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10318192-10319802  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA001914
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA001914-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCGACGATGGAAGCGCAGCACGGTTACCTTTAGCACCAGCAGCCAAGAGTAAAGCAGCTTCTC
CCCATGCATTGCCAACACACAAGGTGAAAATTGGAActgatttaccgatatgccttgacagcag
cttaatctgacataaaagtgaattcatacagtacattataggttgaattgtaaacagcctactg
aaatagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATTTACCGATATGCCTTGACAGCAGCTTAATCTGACATAAAAGTGAATTCATACAGTACAT
TATAGGTTGAATTGTAAACAGCCTACTGAAATAGACTGCCTGCCCCTTCAGTTCATGGGTAGCT
AGTGCAAAATATGAATGTAGCATGGCTGAAAATAACGCAAGGGAAACCTAGTTCGTATCAAATC
TAATGCAATGCAACTAAATTTTCACCAACATCAGTTCCAAGTTCCAACAAGAAGTTTGTATCCC
TATAAGATCTTGGCTTCAGATAAATTGTGTGTAGCCATTCTTAAGGTGGGTTGCTGCAAATAAC
TAAAATAAGTATATTGTCTTTTATCATTTCCAAGGCACGCAAATGCTGCCCCAAAATATAACAA
AGAGCTTCACTTTCAAATCACTGTATCCACCTAATTTTCAGGACATCGGGATCCTGGCAGTGAT
TATATGAAGACAGAAACTATTGTTCAGTTGCCATTCACTCCCTAAGACAGGAGGCCAAATTTTC
TATTGCTCACTTCTGGTAAGATTATAAATGTGCCTAGGTAGTATTGTTAATATGGATAACAGAT
AATCTATACTTCCTCTTAAAAGACTGCATTGGTGGTGGTGACAGCGAAACTGCCACCTCACTTC
TTCCCGCTGCAGTTCTCATAAATTACCGTCCTGATACTTTTTTAGAATTACAGAACCAAAATAA
ATAGGTTGCAAGTACTTGGCATATATATGATCAAGGTCAGCATTCCCTTATCCTACCAAAATAT
AAGGGATTTGGCCCGTGAGTTACATGAGCAAAATCCCTTATATTTTTGGGACAGAGGTAGTAAC
AAACAAGCGGATAACATATTTCATGCAAAAACATATTTTATTTATTTTAGGAATTATTATGACA
TATTTTCTTTTATGCCTAGGTGTAGCACAGCACATGCATTTAGCTATTCAATGTATAATTTTGT
TTACCTGATAATTCAGGTAAGTTAAGAACTCTAACGTTCTTGTCTTGCGGCAATGTTCGATTGA
AAAGCACCAGTTATGAACTAGCGAAATTGTTATGACTGATAAGACATGAACATGTTAAATATTG
ATTTAGTTTGAAATTAAGCTGAAATTATCAGTTCTTTCTTCCAGAATGGATAGGAAAAAATAGG
ATAGGCTATCCTTGGAAAAAATACCATTTCTATTTTCACATTTCGGATTTCTTTTCTTGCTATG
TCAACATCTGTCGCCTGTCCTTGAAAGCGACCAATTGGCTGCACATTAAAGGTCAGAAGAATAA
GATCATTATCCTCGTATTTCTTGGAAGCAAAGACTACTGATACTGTACAGAATTGCATGTTCAC
AAAATAAGTATATCCAAGTGTGCACCACAATCGAAGAGCAAGAATGTGACACATTCTGCTACAG
TGTCTTATTAGTGGTGTGTGATAGACATAGACTTGTCCAAGGTAGAAACTAAACTGCTCTCTAT
TAATTGATGGAAAAGAAAATGACCTGCTTTATCATTATCGTCGACGATGGAAGCGCAGCACGGT
TACCTTTAGCACCAGCAGCCAAGAGTAAAGCAGCTTCTCCCCATGCATTGCCAACACACAAGGT
GAAAATTGGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021