Detail information of BGIOSGA003928_circ_ig.1


General Information
CircRNA Name BGIOSGA003928_circ_ig.1
ID in PlantcircBase osi_circ_010259
Alias Chr01:24986294_24990067(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 26541130-26544901  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003929_circ_igg.1 BGIOSGA003929_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACGCTCTTAGGGCTGCCTGGGACAGGAATAAGCAGAGCGTCTCACACAGATATTAAAGCTCCT
TTTCGAAAATCCTGCGAAGTTGAGCTATTCGACCATggcctgttttggtggagtggtggaggga
cgacagggtatgatggtgagctctactcagcagcagcagctgcagctgcagaggaaggggaagg
ctgtggcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCTGTTTTGGTGGAGTGGTGGAGGGACGACAGGGTATGATGGTGAGCTCTACTCAGCAGCAG
CAGCTGCAGCTGCAGAGGAAGGGGAAGGCTGTGGCGGAGAAGGGCGGCGCGGCGGGGGCGGCGG
CGGCGGAGAAGGTGGTGGTGGCGGTGCGGGCGGCCACCAGGGAGATCTCGAAGACGGCCCTTAT
GTGGGCGTTGACGCACGTCGTGCAGCCCGGCGGCAGTATCTTGCTCCTCGTCGTCGTCCCGTCA
CATAGCTCTGGTATTGTTTTGTTCTCTTGTGTTTCCTGCATTGTGCAGTTTGTACTCTTTTTTT
TTTTGGATTTGTGTTTTGCACTTGGAATATTGAATGCCTTTGCATGCTGCTTGCACAGCTAAAT
GCATATGTGGATTTTCGTCATTGATACCTAAGCTCTTTTCTTACCGTGGTTACTGAACTTCCCT
GCCTCCCTGGTTTCTTCAGTCATGGCTTAAGTGCCCTCAAATATCATTATCTCTTACCTGTATT
TCAGGCAGGAAGTTCTGGGGCTTTCCACTCTTTGCTGGTGATTGCGCAAGTGGCAACAAGACTA
TGTTGGATCAGAAGGATATTTCTGAGCTGTCTTCTCAAATGATGGACAAACTTAAGAATGTTTA
CGATCCAAACAAGGTTTGAAGCTCAGAATTTTTTCTTCTGCAGATGCTTACTTGAACTCTTTAA
CACGTAGTTGCATGTCTCATCTTATGCCATTTGTGTAGATNAATGTGAAGACTAAGGTTGTGTC
TGGGTCACCTCCTGGTGTTGTAGCTGCTGAGTCTAAGCGAGCACAAGCAAGCTGGGTTGTGATA
GACAAGTAAGGGTCAAATCCTATTACAGTGTGCATAAATACATCATAACCTTTTTTTTTTTCTG
TTTTCTTATGTTTCATGTTTCTGCTAATTAGGGAGTTGAAGCATGAAGAGAAACATTGCGTGGA
GGAGCTACAGTGTAATATTGTTGTTATGAAGCGTTCTCAACCTAAAGTTGTTCGGTTGAATCTT
GTGGGATCTCCTGATAAAGATTCCAAAGTATCCTGTTCACTTCCACCTATGTTGGATAGTTCTG
TTGGTAAAACAACAACTGATGTAAAAGAGCCACGGACGTCAATTCGAGGACCGGCTGTAACACC
AAATAGCAGCCCTGACTTGGAGACAACTTTTGAAAGTACTGAAGCTGGAACATCCTCTGTCTCA
AGTTCAGATCCAGGGACTTCTCCATATAGTGCTTCTGACACAAATGGTTCTATGAAGAAAGAGG
CACCAGCAACAAAGGATAGGGTGCAGCATTTGGACATCAATATTTCTGATTCTGACAGCGAAAC
ATTGAGTCCTCCAGCATCCTTCTCGCTTCAACCATGGATGGTTGACATTCTACAGGGATCAGCA
TCGTCGAGAACACATGGAAAAGGTCCACGAAAAGCTCGCACTGCCACAGCAGATGCTTTGCTGG
AGAATATATCCAAGCTGGATCTCTTGAATGAAATTAGTTCTATGAGAAGCCGGTCAGATCTAAA
CTTCCGAGGAAATGTTAGGGATGCTGTCTCGTTGGCAAGGAGTGCACCCCCTGGACCACCTCCA
TTGTGTTCAATATGTCAGCACAAGGCACCTGTTTTTGGAAAACCTCCCCGATGGTTTACTTATG
CTGAATTGGAACTTGCAACTGGTGGTTTCTCTCAAGCCAATTTCCTGGCTGAAGGTGGATTTGG
ATCTGTTCATCGAGGTGTCCTTCATGATGGTCAAGCAATTGCTGTTAAGCAACACAAACTTGCT
AGTTCTCAGGGCGATGTGGAGTTCTGTTCAGAGGTGGAAGTATTGAGTTGTGCGCAACACCGAA
ATGTTGTAATGCTGATTGGTCTTTGTGTTGAGGATAGGAGGCGTTTGCTGGTCTATGAGTACAT
CTGCAATGGATCCTTGGATTCACATCTTTATGGTAAGATCATTTTCTTTCTTGCATTTATCAGT
AAAAAAAGGCAATTCGTGATAAACCACTTGTCTGTAAACTTGGTAATCCAGTTGACAGTTTACC
TACGTGGTAGTAGATTAGTTCTGTAGTCTTGACTCTTGACAGTTGTTCAAGGTACTATGTCTTG
CACCAACAATGGAGTGAAAGTTAGTAATTTTACTGTAAACTAATGTATGTTAAGATATCATTGA
ATAAATTTCAGGTCGTAATAAAGAGACATTGCAATGGTCTGCTAGACAAAAGATTGCAGTTGGG
GCTGCTCGAGGGCTGCGGTATTTGCATGAAGAATGCAGAGTTGGTTGTATAATCCATCGTGACA
TGAGACCAAACAACATCCTTGTCACACATGATTATGAGCCACTGGTATGGTGTGCTCTCCCTTT
GCCTATTTTAGAGTAATATAAGTTTTTCAATCTGTTTGGGATGTTATATATTATTTCTGATATC
ATTTGTTCTTTTTATATCCATTGCAATGATGAAGCCTAACATTTATAGTTCATTCTGTATGGTG
GTGCCTATATTTGCCACACTATACTTTGTCAGGAAGATAATAGGGTATTAACCAGCACAAATTA
GATTGAATTGTAACCATTGTTCTCTGGACTTCCTCATATTATATCAGTAAAACCTAATGTCTGT
TGAACTCGATTGTATAGGCATCTTGTATTCTTGTTAACTTCACAATCCTAAGGTTGTAAGTCTT
TCAATAATGTTCTGACAGGTTGGAGATTTTGGGTTGGCACGATGGCAACCTGATGGTGACATGG
GTGTTGACACGAGAGTAATTGGAACATTCGGGTAAATATTGAGATTTGCAACTGTGTGTTGTAA
CCATGTGCAGTTTTGGGCACTTATTAACGAGGCTCTGCTTGGCTATCTGCAGTTATCTGGCACC
AGAATATGCACAGAGTGGACAAATAACAGAGAAAGCTGATGTATACTCTTTTGGGGTTGTGTTA
GTTGAACTTGTCACTGGGCGCAAGGCTGTTGACATCAACCGACCCAAGGGCCAGCAATTTTTGA
CTGAATGGGTTAGTTCTTTCAATTCCTTTTTTATGATACTTTTCATATGCTCAACAATTCTATG
ATTTTAAATGAAGTGATCTGGGTAATCCCATCAGTGCACTTTATGTTAGTTCATGTTGCAATTT
ATTAGACATTGTAGACAGATAAAACTTCTGATCTAAACTGCACTGCTATGTCAAAATGATGCTT
TACTCCCTTTTGTGCTCTGTAACCTGAACTCATAAAAGATTTGGATTATGACAGGCACGCCCTT
TCTTGGAGGAGTATGCAATTGATGAGCTCATAGATCCACGCTTGGGTGACCGCTATTGTGAAAA
TGAGGTCTATTGCATGTTGCATGCAGCAAAACTTTGCATACGACGTGATCCTCATTCAAGGCCC
CGCATGTCTCATGTTAGTTTTTTCCAGTTCTATCTGCAATTATTTTGTTCTTAGACATTAGTAC
ACTGGATCTTCTAAATGCTTTTCCTTTATTTTATCTTTTGTTTAGGTTCTACGCATACTAGAGG
GCGACATGGTTGTCGATTCTGGCTCTGTTTCAGCCCCAAGTAGTGATTCTGGGAGCAGGAGCTG
GCGAATGCTGAATGAACAACAGAACTGTAGAGACTGGAGCCCAGCTCGACAAGATTCACATCGA
GTGGTCGAAGGAAAAAACTCCTACGACGCTCTTAGGGCTGCCTGGGACAGGAATAAGCAGAGCG
TCTCACACAGATATTAAAGCTCCTTTTCGAAAATCCTGCGAAGTTGAGCTATTCGACCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021