Plant Circular RNA Database

Detail information of Os03g0586600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0586600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_020550
					
						Alias
						Os03circ19142
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 21637929-21641124  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os03g0586600						
					
						Parent gene annotation
						
							Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POL
YPEPTIDE(RPABC6). (Os03t0586600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0586600-01:5

General Information
CircRNA Name	Os03g0586600_circ_g.1
ID in PlantcircBase	osa_circ_020550
Alias	Os03circ19142
Organism	Oryza sativa
Position	chr3: 21637929-21641124 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os03g0586600
Parent gene annotation	Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POL YPEPTIDE(RPABC6). (Os03t0586600-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	leaf
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0586600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGATTCCCATGATCATACGGAAAAAGGACTAGAGAGAGTGAGATAGTAGAGAGTAAGGCAAACC
CCATGTCCATGTCGTTGTAGTCGTCGTCCGCCATGGcttccgtcaggtaagtaccgcctaattg
tgaatgggatcttgcgtgctctcagctctttcatggcaatctaatttgcacaaagacaatagtt
tagcatag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTCCGTCAGGTAAGTACCGCCTAATTGTGAATGGGATCTTGCGTGCTCTCAGCTCTTTCATGG
CAATCTAATTTGCACAAAGACAATAGTTTAGCATAGCAAGTAATTTGAAAGATAGAATAAAATC
AACTGACAATTTCTGACAGAAAGAGAGAAGAAATCTAAGTAGTATTTATAATGAGTTGTTGATA
AGTGCAGTCAACATTCATCTCATCTTGGTTTTGTGGGAGTACTCTACCAAAATATTTCAGTTAC
CATGCCTAAAACATACCAAAATAATTTTTTATCCGGGAAAAGCAATCTAAGACCCTTGTGGAAT
TCTAAAAACATGTGAAAATTTTTCATGACATGGAGGAAGAGGGACACGTGTAAACATACAAAAT
TTTAAGATTGAGAACAATATGGGAGTCAACAAAAATTGTATTCATATTCCGGAAGAATTGATTT
CTTCTATCTCTTCCTTTTCTCTGTCCATCATGATAACAAAGTTTGGCATGAACAAAGAAAACCC
GGCACCTGCCTTTTCCTTTTCCTAGAATTTTTAAAACCTCCGGTTAACTCTTCCGATTTAGATA
TAATAAACCTTCTAGAAGTTGGAATAAGGATGGAACTAATGCGTATGAAAGTCCCACTTCAGGG
ATAGCAGTGGCATATTTACCAGCCAGCAGCCATATAATATATCAAGTGTTACAACAAAACCAAT
CTTTGGTATTGGACTATCAAACACTAAAACATAATACAGAATTAATCAATTGCCACTTGTTCTC
CACATAAACTAGATCAATTTCATGATATTTGAAATGCCATGAAAAACAATGTATAAGAGCCCTG
ACTAATAACTTCTGTCTGGGTAGAAGAACTAATTCAAATAGACAAGTCAGGGTGCTTGTCAACA
TTTGTCCTATCTGTTTTTATATTGTGGAAACAAATCACAGAATCACAAGGCTACCAAATAATAG
TATCTAGAGCCTTGATGAAAGAAATATGTGTACAAATACAACCTTGTGCATACTAGTATAATTG
CAGACGAAAACTTATTGTCAGTCACATATTTAGATTTCAAGCTGACTCGGCGTGGCAGCCCTCC
ATGACGAAAAAAAGACATTCTATTGATTGAATTGCTGGCCTATGTCTATACACAATTACATACA
GCTATCAAACATGTGTACTTTGTTGAATTATATATTCAAACGTTAATTTTATTAATTAGTTGGC
AGTCAGGTGTTGTATGCCTAAACAAGAAAATTCCATTGTTCATTTTCATTCTTCATGATGGAAA
CAGATGTTTATTGTAAAAGGTTATTTAAGTTGTACAATATAAGCTTGGTATATGGAACTGGCAA
AAATCAAAATAATGAATATGTAGAGGTTATCGCTTGTTTGAACAAATACCTATTGCATGTATAG
TTTGGAAAAATAGAATTTACCTCAAGAGGATCAGTTTCTCCCTCAAGCTCAACCATAACTGGAG
CATTCATGCTATAAAACAACAGCAAGGGTTATTAATACTGTATGGTAAACTATTAGCCATCAAA
TTGGCAATACTGTGCAATATGATATATAGAAACATACCTTATCTGTAATGCACGTGTACCCAGG
ATGCGGGCACGCTCATACTTTGTCATATACTTTGACGTTTTGCGTGGGCGCTGAGTTTTTTCTT
GTTCCTTATCTTCAGCCTCTGCCCCTACAACCTCATCAGGGCCATCCTCGTTATTCTCAGGTTC
CTCTTCAGCCCCTTCCTATTATTGAACAGAACTCCATCAGTTCTTTTCCATTAACAGATAACAT
CACTGCATGAGGATAGCAATGTGTGTACCTCAATCTCAGGTTCTGGTGGCTCATCCTCATACCT
GCAGAGGAAAATACAATGCCATTCCAAAATCAATATCCAACAAAACAATCCTTTAAAATGACAT
ATAACAATCAGTGCTTCAGCAATCATATAGTTGTGCAAGGATAATGGTAGATATCTCACTAGGA
TGAAATGTAAAAGAAATTCAAAATTTTCACTTCTACCAACACTAATGAACATAACTTTGGTCTG
TGTAATTTAGTAATTACACTAAAATTGAATATTCCTGAGAAAATGGACATATAACTAACTAATT
CATATGTTTTAACCGCCAAGCCACCACAGTAAATTAAGCAGAAAAGAATGAAACCACACATTCT
TGTTCCAATTAGAAGCAAGATGTTAGAGATCCTCTAAGTTTTTAGCTAGCGTGACAAAGTTAGG
ATTCCATATTAGTACAATGACCATCTATCTTAATATGTAATAGATTTTTTCCATTTTTATCTTT
CATTTTTCTCCTTGTTTTCCTTATATGCATATATATTTTTCCCCTTTCTTTATACTGCTGCATA
AATGATTTGCACCAAGCCTCCTATTACATCAATTGCATAGCTCCCCTGACCTATATCGGTCTAG
CCAATCCCTTCATGTCCATGTCACCATAGAAAGGAGCAAGCAGGAGGTACGCATGAGAACCCCC
CATCCCCGACTGCGTTCAATGTTCTTTTCTCTCAAACAAAGCGGTATAGAATCATCAATGAAAA
TTCCCATAATTGGTGAGCGGGATTGTCGCATTAACCCAATTGATTCATCCAAGCAAACCTAAAT
TTCAAAGAACCTGCTAAACCTAACCATAACCAAACAAGCAGGGAAACAGAATATCACTCTTTAC
AGTATCCCCTTCTGTTGCTGACAAACTAATCTCAGACAACTTCTAAGAGCCATTACTCGACTCA
ACGAACGAAACATGCCCTAAGAATAATACTCGACTCAACGATCAAAACATGCCCCAAGAATAAA
CTCCAAAGACACCTTTTACCCGTGAAGACCAGTACGCATCCAACATTAACACCTCTCGTTTTCC
AAAAACCAATCGAGTGAATCGCGGCAATCGCCATAACTAGCTTCGACTCGAATCAACGAACCCA
CCACCCCAAATGCTCCCCATGGCGATGAGGAGCGCCAACGAATCACCCAGCACAGACTCCTACC
GGCGCAACATGTTACACAGAGAGCTGGTTCGACCGGTCTGGGATTAGAAATTTATTAGAACAGG
CGATGCCTATCGAAACCCTAGATTGGATTCCCATGATCATACGGAAAAAGGACTAGAGAGAGTG
AGATAGTAGAGAGTAAGGCAAACCCCATGTCCATGTCGTTGTAGTCGTCGTCCGCCATGG
						
					

			
		

Sequences
Splice junction sequence	GGATTCCCATGATCATACGGAAAAAGGACTAGAGAGAGTGAGATAGTAGAGAGTAAGGCAAACC CCATGTCCATGTCGTTGTAGTCGTCGTCCGCCATGGcttccgtcaggtaagtaccgcctaattg tgaatgggatcttgcgtgctctcagctctttcatggcaatctaatttgcacaaagacaatagtt tagcatag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTCCGTCAGGTAAGTACCGCCTAATTGTGAATGGGATCTTGCGTGCTCTCAGCTCTTTCATGG CAATCTAATTTGCACAAAGACAATAGTTTAGCATAGCAAGTAATTTGAAAGATAGAATAAAATC AACTGACAATTTCTGACAGAAAGAGAGAAGAAATCTAAGTAGTATTTATAATGAGTTGTTGATA AGTGCAGTCAACATTCATCTCATCTTGGTTTTGTGGGAGTACTCTACCAAAATATTTCAGTTAC CATGCCTAAAACATACCAAAATAATTTTTTATCCGGGAAAAGCAATCTAAGACCCTTGTGGAAT TCTAAAAACATGTGAAAATTTTTCATGACATGGAGGAAGAGGGACACGTGTAAACATACAAAAT TTTAAGATTGAGAACAATATGGGAGTCAACAAAAATTGTATTCATATTCCGGAAGAATTGATTT CTTCTATCTCTTCCTTTTCTCTGTCCATCATGATAACAAAGTTTGGCATGAACAAAGAAAACCC GGCACCTGCCTTTTCCTTTTCCTAGAATTTTTAAAACCTCCGGTTAACTCTTCCGATTTAGATA TAATAAACCTTCTAGAAGTTGGAATAAGGATGGAACTAATGCGTATGAAAGTCCCACTTCAGGG ATAGCAGTGGCATATTTACCAGCCAGCAGCCATATAATATATCAAGTGTTACAACAAAACCAAT CTTTGGTATTGGACTATCAAACACTAAAACATAATACAGAATTAATCAATTGCCACTTGTTCTC CACATAAACTAGATCAATTTCATGATATTTGAAATGCCATGAAAAACAATGTATAAGAGCCCTG ACTAATAACTTCTGTCTGGGTAGAAGAACTAATTCAAATAGACAAGTCAGGGTGCTTGTCAACA TTTGTCCTATCTGTTTTTATATTGTGGAAACAAATCACAGAATCACAAGGCTACCAAATAATAG TATCTAGAGCCTTGATGAAAGAAATATGTGTACAAATACAACCTTGTGCATACTAGTATAATTG CAGACGAAAACTTATTGTCAGTCACATATTTAGATTTCAAGCTGACTCGGCGTGGCAGCCCTCC ATGACGAAAAAAAGACATTCTATTGATTGAATTGCTGGCCTATGTCTATACACAATTACATACA GCTATCAAACATGTGTACTTTGTTGAATTATATATTCAAACGTTAATTTTATTAATTAGTTGGC AGTCAGGTGTTGTATGCCTAAACAAGAAAATTCCATTGTTCATTTTCATTCTTCATGATGGAAA CAGATGTTTATTGTAAAAGGTTATTTAAGTTGTACAATATAAGCTTGGTATATGGAACTGGCAA AAATCAAAATAATGAATATGTAGAGGTTATCGCTTGTTTGAACAAATACCTATTGCATGTATAG TTTGGAAAAATAGAATTTACCTCAAGAGGATCAGTTTCTCCCTCAAGCTCAACCATAACTGGAG CATTCATGCTATAAAACAACAGCAAGGGTTATTAATACTGTATGGTAAACTATTAGCCATCAAA TTGGCAATACTGTGCAATATGATATATAGAAACATACCTTATCTGTAATGCACGTGTACCCAGG ATGCGGGCACGCTCATACTTTGTCATATACTTTGACGTTTTGCGTGGGCGCTGAGTTTTTTCTT GTTCCTTATCTTCAGCCTCTGCCCCTACAACCTCATCAGGGCCATCCTCGTTATTCTCAGGTTC CTCTTCAGCCCCTTCCTATTATTGAACAGAACTCCATCAGTTCTTTTCCATTAACAGATAACAT CACTGCATGAGGATAGCAATGTGTGTACCTCAATCTCAGGTTCTGGTGGCTCATCCTCATACCT GCAGAGGAAAATACAATGCCATTCCAAAATCAATATCCAACAAAACAATCCTTTAAAATGACAT ATAACAATCAGTGCTTCAGCAATCATATAGTTGTGCAAGGATAATGGTAGATATCTCACTAGGA TGAAATGTAAAAGAAATTCAAAATTTTCACTTCTACCAACACTAATGAACATAACTTTGGTCTG TGTAATTTAGTAATTACACTAAAATTGAATATTCCTGAGAAAATGGACATATAACTAACTAATT CATATGTTTTAACCGCCAAGCCACCACAGTAAATTAAGCAGAAAAGAATGAAACCACACATTCT TGTTCCAATTAGAAGCAAGATGTTAGAGATCCTCTAAGTTTTTAGCTAGCGTGACAAAGTTAGG ATTCCATATTAGTACAATGACCATCTATCTTAATATGTAATAGATTTTTTCCATTTTTATCTTT CATTTTTCTCCTTGTTTTCCTTATATGCATATATATTTTTCCCCTTTCTTTATACTGCTGCATA AATGATTTGCACCAAGCCTCCTATTACATCAATTGCATAGCTCCCCTGACCTATATCGGTCTAG CCAATCCCTTCATGTCCATGTCACCATAGAAAGGAGCAAGCAGGAGGTACGCATGAGAACCCCC CATCCCCGACTGCGTTCAATGTTCTTTTCTCTCAAACAAAGCGGTATAGAATCATCAATGAAAA TTCCCATAATTGGTGAGCGGGATTGTCGCATTAACCCAATTGATTCATCCAAGCAAACCTAAAT TTCAAAGAACCTGCTAAACCTAACCATAACCAAACAAGCAGGGAAACAGAATATCACTCTTTAC AGTATCCCCTTCTGTTGCTGACAAACTAATCTCAGACAACTTCTAAGAGCCATTACTCGACTCA ACGAACGAAACATGCCCTAAGAATAATACTCGACTCAACGATCAAAACATGCCCCAAGAATAAA CTCCAAAGACACCTTTTACCCGTGAAGACCAGTACGCATCCAACATTAACACCTCTCGTTTTCC AAAAACCAATCGAGTGAATCGCGGCAATCGCCATAACTAGCTTCGACTCGAATCAACGAACCCA CCACCCCAAATGCTCCCCATGGCGATGAGGAGCGCCAACGAATCACCCAGCACAGACTCCTACC GGCGCAACATGTTACACAGAGAGCTGGTTCGACCGGTCTGGGATTAGAAATTTATTAGAACAGG CGATGCCTATCGAAACCCTAGATTGGATTCCCATGATCATACGGAAAAAGGACTAGAGAGAGTG AGATAGTAGAGAGTAAGGCAAACCCCATGTCCATGTCGTTGTAGTCGTCGTCCGCCATGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.33005727

Conservation Information
Conserved circRNAs	NA
PMCS	0.33005727

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os03g0586600_circ_g.1

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