Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d030133_circ_g.1 |
ID in PlantcircBase | zma_circ_006593 |
Alias | zma_circ_0000224 |
Organism | Zea mays |
Position | chr1: 108284392-108286525 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d030133 |
Parent gene annotation |
CSC1-like protein |
Parent gene strand | - |
Alternative splicing | Zm00001d030133_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d030133_T001:2 Zm00001d030133_T005:4 Zm00001d030133_T002:7 Zm00001d030133_T003:7 Zm00001d030133_T004:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.131515254 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
108286401-108284481(+) 108286203-108284394(-) |
Potential amino acid sequence |
MESLSISLKTTSFLRSSNVPPDTLTGIRTRRARVVMGRNILRCVGGWWRNEYSCSNAVPAIMLP RNTFTSMK*(+) MAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSETVDEFFRRN HPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGFCGREVDQID YYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQWLTDWAPEP RDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPFLKPVIEAHV VKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVNVFLGSIIAG TAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDKLSISNVSPG SNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSE TVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGF CGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQ WLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPF LKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVN VFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDK LSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIP RVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRP TRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQ TQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANL EGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTAS KYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRK EVVFSDIDKLSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADH FTVIVRNIPRVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELK FERHPERRPTRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDS RWGAAVCAQTQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPI AFVQSLANLEGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSL SSLERRTASKYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPT(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |