Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d030133_circ_g.1 |
| ID in PlantcircBase | zma_circ_006593 |
| Alias | zma_circ_0000224 |
| Organism | Zea mays |
| Position | chr1: 108284392-108286525 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d030133 |
| Parent gene annotation |
CSC1-like protein |
| Parent gene strand | - |
| Alternative splicing | Zm00001d030133_circ_g.2 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d030133_T001:2 Zm00001d030133_T005:4 Zm00001d030133_T002:7 Zm00001d030133_T003:7 Zm00001d030133_T004:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.131515254 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
108286401-108284481(+) 108286203-108284394(-) |
| Potential amino acid sequence |
MESLSISLKTTSFLRSSNVPPDTLTGIRTRRARVVMGRNILRCVGGWWRNEYSCSNAVPAIMLP RNTFTSMK*(+) MAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSETVDEFFRRN HPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGFCGREVDQID YYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQWLTDWAPEP RDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPFLKPVIEAHV VKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVNVFLGSIIAG TAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDKLSISNVSPG SNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSE TVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGF CGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQ WLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPF LKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVN VFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDK LSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIP RVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRP TRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQ TQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANL EGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTAS KYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRK EVVFSDIDKLSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADH FTVIVRNIPRVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELK FERHPERRPTRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDS RWGAAVCAQTQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPI AFVQSLANLEGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSL SSLERRTASKYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPT(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |