Detail information of Zm00001d030133_circ_g.1


General Information
CircRNA Name Zm00001d030133_circ_g.1
ID in PlantcircBase zma_circ_006593
Alias zma_circ_0000224
Organism Zea mays
Position chr1: 108284392-108286525  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d030133
Parent gene annotation CSC1-like protein
Parent gene strand -
Alternative splicing Zm00001d030133_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d030133_T001:2
Zm00001d030133_T005:4
Zm00001d030133_T002:7
Zm00001d030133_T003:7
Zm00001d030133_T004:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAACTTCCTTTCTTAGATCAAGTAATGTGCCGCCAGATACGTTGACTGGGATAAGAACCAGA
AGGGCGAGAGTCGTAATGGGCAGAAATATCTTGAGGtgtgtaggaggctggtggagaaacgaat
atagctgttcaaatgctgtgccagcgattatgcttccaagaaatacgttcaccagcatgaagta
gtaatatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1179
Transcript exons: 108284392-108284637,108284752-108285092,108285263-108285
343,108285475-108285594,108285746-108285847,108286085-10
8286220,108286373-108286525
TGTGTAGGAGGCTGGTGGAGAAACGAATATAGCTGTTCAAATGCTGTGCCAGCGATTATGCTTC
CAAGAAATACGTTCACCAGCATGAAGTAGTAATATTTCGAAGCAGTCCTCCTTTCCAGCGAGGA
TAAAGAGACATAGCCTTCAACCTTTGACATGATTAGCAGGACAGTAGGGAGAATATAGAGAAAA
ATCTTCAGAGCCAGACCAGGAAGAAATCCCTGAAGGAAAGATTTTACCACATGTGCTTCTATTA
CTGGCTTCAGAAAAGGAGCAACTTTTTCAAGACCCTCGAGATTGGCAAGCGATTGAACAAACGC
GATGGGGATCATGTAGAAAAACACTAGAGCAAAGACAGCGACAGACATCAGAAACCTGCGGATA
CTGAGAGAGAAAAATGGGATGGCAAGATTTTGCCAATAAACATCCCGCGGTTCAGGAGCCCAAT
CAGTCAACCATTGGGTTGGGTTCTTTGACTGTTGTGTCTGTGCACACACAGCCGCACCCCATCT
CGAGTCAAATGTCACAAAAGAAACTGGCATAACAGCTTTTGGGTCATTGAGAATTTTCTGTCGT
TCTGATGTCATCCTCCTCTCAAGCTCGCTGATTCTAGCCCGGTAGTAGTCTATTTGATCCACTT
CCCTGCCACAGAAACCAAGGCATCCTGTCCGTCTTGTTGGTCTTCTCTCAGGATGCCTTTCGAA
CTTCAGTTCGTAGTAATCCAACCAGTTTTGGAGCCTCTCCTTTTGCTTCACAAGTTTAGCATAC
CGATTTGCATTGTAAACAGGCTGATGACCAAGATAGTGGTCTGGGTGATTTCTTCGGAAGAACT
CATCCACTGTTTCAGAAGTTGAATGACTTGAGACACGAGGAATGTTTCTAACAATCACTGTGAA
ATGATCGGCACAGCGCTTCTGGGAAGCCAGGAAATGCAACCTCATAAATGCTACATTGCTGTAT
TCTTTGTACAGCATAAAGCACACCCAGAATGTGAACACATATGCCATCAAGAGATGGATAAAGA
ATCTGTTGGATCCAGGGCTAACATTTGATATGGAAAGCTTATCGATATCACTGAAAACAACTTC
CTTTCTTAGATCAAGTAATGTGCCGCCAGATACGTTGACTGGGATAAGAACCAGAAGGGCGAGA
GTCGTAATGGGCAGAAATATCTTGAGG

Genomic sequence TGTGTAGGAGGCTGGTGGAGAAACGAATATAGCTGTTCAAATGCTGTGCCAGCGATTATGCTTC
CAAGAAATACGTTCACCAGCATGAAGTAGTAATATTTCGAAGCAGTCCTCCTTTCCAGCGAGGA
TAAAGAGACATAGCCTTCAACCTTTGACATGATTAGCAGGACAGTAGGGAGAATATAGAGAAAA
ATCTTCAGAGCCAGACCAGGAAGAAATCCCTGAAGGAAAGATTTTACCACATGTCTGCAGACCA
AACAAGAAAGCATATGAGAAAGCAGGGAACAGACCTACTAAGTAGCAGTGAAGAGTTATTTGCA
TCAGGAAGAGAACGAATGTACAGAGAAGGAAAAGTCTTACGCTTCTATTACTGGCTTCAGAAAA
GGAGCAACTTTTTCAAGACCCTCGAGATTGGCAAGCGATTGAACAAACGCGATGGGGATCATGT
AGAAAAACACTAGAGCAAAGACAGCGACAGACATCAGAAACCTGCGGATACTGAGAGAGAAAAA
TGGGATGGCAAGATTTTGCCAATAAACATCCCGCGGTTCAGGAGCCCAATCAGTCAACCATTGG
GTTGGGTTCTTTGACTGTTGTGTCTGTGCACACACAGCCGCACCCCATCTCGAGTCAAATGTCA
CAAAAGAAACTGGCATAACAGCTTTTGGGTCATTGAGAATTTTCTGTCGTTCTGATGTCATCTG
AAAACATCAAGAGAATAAACAGCCTGTGTTAACAGTGTACACACAGAAATAAAAACTATTTTTG
CTCAAAAAACAGACATACAACAGATCCACAAGTTAAGTTCACATATTTAAGAATTATGCATATC
ATTGACAATGAATCATATAATCAAGAGCTGAAGACTTACCCTCCTCTCAAGCTCGCTGATTCTA
GCCCGGTAGTAGTCTATTTGATCCACTTCCCTGCCACAGAAACCAAGGCATCCTGTCTAAAACA
CATAAAACAAACAACATGCTGAACCATTTCCCATTTCTTGGAAATAAAATACAGAATGGATACA
TTTGAAGAACATGGCACACCAGAAATGTAAGAGAACAGAATCAATGTTGGAAAAGTTACCCGTC
TTGTTGGTCTTCTCTCAGGATGCCTTTCGAACTTCAGTTCGTAGTAATCCAACCAGTTTTGGAG
CCTCTCCTTTTGCTTCACAAGTTTAGCATACCGATTTGCATTGTAAACAGGCTAATAATAAAAG
GCAAGGTTGTCTCAGTATCCACCACAATTCTCAACAACCATCATTTGGTATCGGTTAAAAAACA
AGTACAATGTAAGAAAATCATGTCTGACCAAATGCAAGGTGAAGGTGGCGTAAGAAAATGAGAG
GGTCATGTACCTGATGACCAAGATAGTGGTCTGGGTGATTTCTTCGGAAGAACTCATCCACTGT
TTCAGAAGTTGAATGACTTGAGACACGAGGAATGTTTCTAACAATCACCTGGAATTGCAAAAAA
AAAACATTAAATGCTACAGAAATACTATAAGGGTCTCAGATATAAATGTGAATACATTAAGTTG
TAGCACAAATTTGGTACATGTTCTGCGCAGCAAATCCACACTAGGGCATGTGTTTTGTGTTCAA
ATACTCTTTTCATAGATATCCGTCACAAATGCAGTGGAGCATGGTTCATATATAAGGTTAGTAT
ATCACATCATACTTTGTCAATGTACTTACTGTGAAATGATCGGCACAGCGCTTCTGGGAAGCCA
GGAAATGCAACCTCATAAATGCTACATTGCTGTATTCTTTGTACAGCATAAAGCACACCCAGAA
TGTGAACACATATGCCATCAAGAGATGGATAAAGAATCTGAAACGAATTGCAACGACAATGATC
AGATAGCTCTGAGCAGTCCCAACATGCAAAAACAAAACTGAAAGCATAGCAGGCATGGAAATGT
TGTGGACATTATATGAGCATGAGGAACAGCCAAAAAAATTAAGAGTTCGTAAGATCCGCACCTG
TTGGATCCAGGGCTAACATTTGATATGGAAAGCTTATCGATATCACTGAAAACAACTTCCTTTC
TTAGATCAAGTAATGTGCCGCCAGATACGTTGACTGGGATAAGAACCAGAAGGGCGAGAGTCGT
AATGGGCAGAAATATCTTGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.131515254
Functional Information
Coding potential Y
Potential coding position 108286401-108284481(+)
108286203-108284394(-)
Potential amino acid sequence MESLSISLKTTSFLRSSNVPPDTLTGIRTRRARVVMGRNILRCVGGWWRNEYSCSNAVPAIMLP
RNTFTSMK*(+)
MAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSETVDEFFRRN
HPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGFCGREVDQID
YYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQWLTDWAPEP
RDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPFLKPVIEAHV
VKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVNVFLGSIIAG
TAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDKLSISNVSPG
SNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIPRVSSHSTSE
TVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRPTRRTGCLGF
CGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQTQQSKNPTQ
WLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANLEGLEKVAPF
LKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTASKYYYFMLVN
VFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRKEVVFSDIDK
LSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADHFTVIVRNIP
RVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELKFERHPERRP
TRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDSRWGAAVCAQ
TQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPIAFVQSLANL
EGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSLSSLERRTAS
KYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPTHLKIFLPITTLALLVLIPVNVSGGTLLDLRK
EVVFSDIDKLSISNVSPGSNRFFIHLLMAYVFTFWVCFMLYKEYSNVAFMRLHFLASQKRCADH
FTVIVRNIPRVSSHSTSETVDEFFRRNHPDHYLGHQPVYNANRYAKLVKQKERLQNWLDYYELK
FERHPERRPTRRTGCLGFCGREVDQIDYYRARISELERRMTSERQKILNDPKAVMPVSFVTFDS
RWGAAVCAQTQQSKNPTQWLTDWAPEPRDVYWQNLAIPFFSLSIRRFLMSVAVFALVFFYMIPI
AFVQSLANLEGLEKVAPFLKPVIEAHVVKSFLQGFLPGLALKIFLYILPTVLLIMSKVEGYVSL
SSLERRTASKYYYFMLVNVFLGSIIAGTAFEQLYSFLHQPPT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b