Plant Circular RNA Database

Detail information of Os07g0583600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0583600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_034545
					
						Alias
						Os07circ15633
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 23650603-23653056  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os07g0583600						
					
						Parent gene annotation
						
							Chitin-inducible gibberellin-responsive protein. (Os07t0583600-0
1);Chitin-inducible gibberellin-responsive protein. (Os07t058360
0-02);Similar to Chitin-inducible gibberellin-responsive protein
 2. (Os07t0583600-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0583600_circ_g.2 Os07g0583600_circ_g.3 						
					
						Support reads
						3
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0583600-03:1
Os07t0583600-02:2
Os07t0583600-01:2

General Information
CircRNA Name	Os07g0583600_circ_g.1
ID in PlantcircBase	osa_circ_034545
Alias	Os07circ15633
Organism	Oryza sativa
Position	chr7: 23650603-23653056 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os07g0583600
Parent gene annotation	Chitin-inducible gibberellin-responsive protein. (Os07t0583600-0 1);Chitin-inducible gibberellin-responsive protein. (Os07t058360 0-02);Similar to Chitin-inducible gibberellin-responsive protein 2. (Os07t0583600-03)
Parent gene strand	+
Alternative splicing	Os07g0583600_circ_g.2 Os07g0583600_circ_g.3
Support reads	3
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0583600-03:1 Os07t0583600-02:2 Os07t0583600-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGAGAAGACAGGATTCATATCATCGACTTCCATATCTCTCAAGGGGCTCAGTGGATCTCTCTCC
TTCAGGCCCTTGCAGCCAGGCCTGGTGGACCACCAAcaccaccacctgcttcctccgcggctgc
gtgcgccgcctccccaacccttcgtcctccccgccggccgccgctgagatccgacgcgccggag
cggagctc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CACCACCACCTGCTTCCTCCGCGGCTGCGTGCGCCGCCTCCCCAACCCTTCGTCCTCCCCGCCG
GCCGCCGCTGAGATCCGACGCGCCGGAGCGGAGCTCGCTGAGGTAATCGCCGTCCTTTCTTGTA
GCAGCTGGTGGTAGTACTATAGTATGCTGTATGCTAGCTAGGCCGGGTTCTTCGTGTAGTGCGC
ATGCGAGGCTGGATCGGAGCGCGCGGGTGCGACATGCGAGGCTGCTCTGCTCTGTGGAAGTTCC
TCGCATGGCTCAAATCCAGCACTTTGCTTTGCTTCTTTCGGTAGCTTGGCGATTCTTCTAGGCA
TATCGTTGTTCATCTACGCATTCGTGAGCGTGTTTAGCGACGCATGCAGCGGCTTAGTCCCCGT
TGAATCGTGGTTTGGTTGAAGCCGTGAAGTTAATCACCGAGAGAGACGGACCGCGTCATAGCAG
CGCACGAGTGGTAGCTGAGCAAGGTAGATCTTGAAGCTTTTGACCGCTGACTTGGAGTGAATTT
TTTTAAGGTGGGTGTTCGTAATAATCTTGTGCCGGGACCCGGGGGTAGTTGCGCTAAACGGGTC
AAAGTGTCAAACTTTGCCCTCTGTTTTGGTGTCGGAAAATTATGGGAGAGGGGGATACTTTACG
ACTTGATCTACAGCCCTCTGTTTTGTTGGCACACGGATTGGTCGAACCTTCTTGTACGATGGGT
GTACGGTACCCATCCATTCATGACGTTGTTCTACGGTCAGCGTTACGGCATGCTGCTTGATTTT
GTTCACTTGTCGGTAGGACTAGGATGCCAAAATAGTTGGTGGTATTGCACAACCTAATTTCTTA
GTTGTTTCTTTTTTGTTTCGTCTTTTATTAGCGGAATTAACATGTTTTCACATCATAATGATGC
TTGTTTAGAAGAGCTAAGGTTTCTGCTCGTCTTAGTTTTATTTGGCAGAAAAGAATGCATGTAT
GACATTTGATCCCAAGTTAAGTTGCCACAGTCCAACATGTACTTTGGCATGCCCGCTTTCTTCA
GTTCTGATCAGATACTCAGTATTGTTGTAGGATAGATTCTATGTAGTTTTCTGGCGATCTTCTT
TCGTTAGATACAGTAGATTATCTCAGGTATCTGAGATTTGAGATATTGTGGTTTTCTCAACATT
AAATGTTTGAGAATTCATAGTGGGTGGTTTCTTCAATGAAACAACGTCAGAAAATCCATTTCAA
TTACCGATATTGCCTTGTTTGGTTCTGATACTACTTAAAATAATTGCTTCCAGTAGTTCAGTGC
CAGATTTACTTGAGTTGGTAGCTCAGTTTGTTTATGTTCTGACTTCTGATATCTACTGGTTCAT
TGCAGATTTTGTTCCTGCTGGATTTCTGAAATTTTACTGGAGGACTAGAGATATCAAGACACCA
ACAACAAACTAGTACAAAGTTTTCCTTCCAGTTAATCTGTTCCTGGATCTCCTTGCCATACGCG
AAGCAGTGGATACTATGCAGTAATTGGTTAGGAGGTCTTTACTGAACCATAATGGCTGATACTC
CAACTTCCCGAATGATTCATCCCTTCAGCAATATACCGAGCCAAAACCTGAAGCAGTTCCAGTA
TTCTGATAATCCACAGCACCCTTGCCACCCTTATAGGGCACCTTCAGACACCCACGTTGTGCCA
CATCATTATGGCCTAAAGTCACATTCACCGGATGCTGGTTATGAAAGCCAGGCTACTCCTAACA
AGTACACATTGGACTCCTCTGAAGGTGCTGGTTGTATGAGACATGATTCTCCTTCCAGTCAAAG
TTTCACAACCAGAAGTGGTAGCCCTCTATCTCAGGAAGACAGCCACTCTGACTCGACTGATGGA
TCTCCTGTAGGCGCCTCCTGTGTCACTGAGGATCCTAATGATCTGAAGCAAAAACTGAAGGATC
TCGAGGCCGTTATGCTTGGGCCAGACTCGGAAATAGTCAACAGCCTTGAGAATTCGGTGGCAAA
CCAACTTTCCTTGGAGCCGGAGAAGTGGGTGCGCATGATGGGCATTCCTAGAGGCAACTTGAAA
GAGCTACTGATTGCCTGTGCTAGAGCTGTGGAAGAGAAGAATAGCTTTGCTATTGATATGATGA
TTCCAGAGCTGAGAAAAATAGTTTCGGTATCTGGTGAGCCACTTGAGAGGTTGGGAGCCTACAT
GGTAGAAGGGCTTGTTGCCAGGCTTGCCTCCTCTGGCATTTCAATCTACAAAGCTTTGAAATGC
AAGGAACCAAAGAGCTCTGACCTTCTGTCTTACATGCACTTCCTGTATGAGGCCTGTCCCTACT
TCAAGTTTGGGTATATGTCGGCAAATGGTGCTATTGCAGAGGCTGTCAAGGGAGAAGACAGGAT
TCATATCATCGACTTCCATATCTCTCAAGGGGCTCAGTGGATCTCTCTCCTTCAGGCCCTTGCA
GCCAGGCCTGGTGGACCACCAA
						
					

			
		

Sequences
Splice junction sequence	GGAGAAGACAGGATTCATATCATCGACTTCCATATCTCTCAAGGGGCTCAGTGGATCTCTCTCC TTCAGGCCCTTGCAGCCAGGCCTGGTGGACCACCAAcaccaccacctgcttcctccgcggctgc gtgcgccgcctccccaacccttcgtcctccccgccggccgccgctgagatccgacgcgccggag cggagctc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CACCACCACCTGCTTCCTCCGCGGCTGCGTGCGCCGCCTCCCCAACCCTTCGTCCTCCCCGCCG GCCGCCGCTGAGATCCGACGCGCCGGAGCGGAGCTCGCTGAGGTAATCGCCGTCCTTTCTTGTA GCAGCTGGTGGTAGTACTATAGTATGCTGTATGCTAGCTAGGCCGGGTTCTTCGTGTAGTGCGC ATGCGAGGCTGGATCGGAGCGCGCGGGTGCGACATGCGAGGCTGCTCTGCTCTGTGGAAGTTCC TCGCATGGCTCAAATCCAGCACTTTGCTTTGCTTCTTTCGGTAGCTTGGCGATTCTTCTAGGCA TATCGTTGTTCATCTACGCATTCGTGAGCGTGTTTAGCGACGCATGCAGCGGCTTAGTCCCCGT TGAATCGTGGTTTGGTTGAAGCCGTGAAGTTAATCACCGAGAGAGACGGACCGCGTCATAGCAG CGCACGAGTGGTAGCTGAGCAAGGTAGATCTTGAAGCTTTTGACCGCTGACTTGGAGTGAATTT TTTTAAGGTGGGTGTTCGTAATAATCTTGTGCCGGGACCCGGGGGTAGTTGCGCTAAACGGGTC AAAGTGTCAAACTTTGCCCTCTGTTTTGGTGTCGGAAAATTATGGGAGAGGGGGATACTTTACG ACTTGATCTACAGCCCTCTGTTTTGTTGGCACACGGATTGGTCGAACCTTCTTGTACGATGGGT GTACGGTACCCATCCATTCATGACGTTGTTCTACGGTCAGCGTTACGGCATGCTGCTTGATTTT GTTCACTTGTCGGTAGGACTAGGATGCCAAAATAGTTGGTGGTATTGCACAACCTAATTTCTTA GTTGTTTCTTTTTTGTTTCGTCTTTTATTAGCGGAATTAACATGTTTTCACATCATAATGATGC TTGTTTAGAAGAGCTAAGGTTTCTGCTCGTCTTAGTTTTATTTGGCAGAAAAGAATGCATGTAT GACATTTGATCCCAAGTTAAGTTGCCACAGTCCAACATGTACTTTGGCATGCCCGCTTTCTTCA GTTCTGATCAGATACTCAGTATTGTTGTAGGATAGATTCTATGTAGTTTTCTGGCGATCTTCTT TCGTTAGATACAGTAGATTATCTCAGGTATCTGAGATTTGAGATATTGTGGTTTTCTCAACATT AAATGTTTGAGAATTCATAGTGGGTGGTTTCTTCAATGAAACAACGTCAGAAAATCCATTTCAA TTACCGATATTGCCTTGTTTGGTTCTGATACTACTTAAAATAATTGCTTCCAGTAGTTCAGTGC CAGATTTACTTGAGTTGGTAGCTCAGTTTGTTTATGTTCTGACTTCTGATATCTACTGGTTCAT TGCAGATTTTGTTCCTGCTGGATTTCTGAAATTTTACTGGAGGACTAGAGATATCAAGACACCA ACAACAAACTAGTACAAAGTTTTCCTTCCAGTTAATCTGTTCCTGGATCTCCTTGCCATACGCG AAGCAGTGGATACTATGCAGTAATTGGTTAGGAGGTCTTTACTGAACCATAATGGCTGATACTC CAACTTCCCGAATGATTCATCCCTTCAGCAATATACCGAGCCAAAACCTGAAGCAGTTCCAGTA TTCTGATAATCCACAGCACCCTTGCCACCCTTATAGGGCACCTTCAGACACCCACGTTGTGCCA CATCATTATGGCCTAAAGTCACATTCACCGGATGCTGGTTATGAAAGCCAGGCTACTCCTAACA AGTACACATTGGACTCCTCTGAAGGTGCTGGTTGTATGAGACATGATTCTCCTTCCAGTCAAAG TTTCACAACCAGAAGTGGTAGCCCTCTATCTCAGGAAGACAGCCACTCTGACTCGACTGATGGA TCTCCTGTAGGCGCCTCCTGTGTCACTGAGGATCCTAATGATCTGAAGCAAAAACTGAAGGATC TCGAGGCCGTTATGCTTGGGCCAGACTCGGAAATAGTCAACAGCCTTGAGAATTCGGTGGCAAA CCAACTTTCCTTGGAGCCGGAGAAGTGGGTGCGCATGATGGGCATTCCTAGAGGCAACTTGAAA GAGCTACTGATTGCCTGTGCTAGAGCTGTGGAAGAGAAGAATAGCTTTGCTATTGATATGATGA TTCCAGAGCTGAGAAAAATAGTTTCGGTATCTGGTGAGCCACTTGAGAGGTTGGGAGCCTACAT GGTAGAAGGGCTTGTTGCCAGGCTTGCCTCCTCTGGCATTTCAATCTACAAAGCTTTGAAATGC AAGGAACCAAAGAGCTCTGACCTTCTGTCTTACATGCACTTCCTGTATGAGGCCTGTCCCTACT TCAAGTTTGGGTATATGTCGGCAAATGGTGCTATTGCAGAGGCTGTCAAGGGAGAAGACAGGAT TCATATCATCGACTTCCATATCTCTCAAGGGGCTCAGTGGATCTCTCTCCTTCAGGCCCTTGCA GCCAGGCCTGGTGGACCACCAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.164451087

Conservation Information
Conserved circRNAs	NA
PMCS	0.164451087

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os07g0583600_circ_g.1

Address

Any questions?

Supported by