Plant Circular RNA Database

Detail information of AT3G07980_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT3G07980_circ_g.1
					
						ID in PlantcircBase
						ath_circ_020399
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 2544154-2547787  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT3G07980						
					
						Parent gene annotation
						
							MAP3K epsilon protein kinase 2
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G07980.1:10
AT3G07980.3:10
AT3G07980.2:11

General Information
CircRNA Name	AT3G07980_circ_g.1
ID in PlantcircBase	ath_circ_020399
Alias	NA
Organism	Arabidpsis thaliana
Position	chr3: 2544154-2547787 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT3G07980
Parent gene annotation	MAP3K epsilon protein kinase 2
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G07980.1:10 AT3G07980.3:10 AT3G07980.2:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGATATAAAATGACAAAAGATTGCTAAAAGTTCAGGATATAAATTTACAGAATACCTGCAGAGG
AAAAAGATTCTCCGGGGGAACTTTTTCATCAAATACcttgatgagtttcaggaggttaagtcga
gcaatagcatcttggtggtctagtcttgcaatgagtaacggagtcagtccatttaacgctaatg
tcttattg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGATGAGTTTCAGGAGGTTAAGTCGAGCAATAGCATCTTGGTGGTCTAGTCTTGCAATGAGT
AACGGAGTCAGTCCATTTAACGCTAATGTCTTATTGATTGAAGATGATTTCCTGGATTCAACAA
AGAGAAGGATTAGCTCCATACTAACTAATTTTGAAAAGATAGACATTCTATTAAAAAGAGGAGA
GATGCATACGTGATGATCTTCAAGAATGGCTCCAAAATGTGCACAAAATGTCTCTCTGGACAGT
TCTGGAAAAAGTTAACTAATTTCTGAATTGCATCTTTCTTGAGAAACGCCTGCTCCACCTTTTG
GTCAACGTCTTGCGCCAAGCAAACAGCAATTGAATCCAAGGCTATCACGGACCAATATTCATCA
TCGAGTAAACTCAGGTAAACATCCAGACCGCCGTGGGCCCTTAACTGCTCTCTTGAATTCCGAG
ATGCATGAGCCATATCACAAAGTAGTGGCAATGCATATTGTTTCAGAGGAGAATCCGACATGAC
GAAAAGCATCAGGTGCGGAATGATTCCATTTTCAGCAGCTTGTTCCTGCCTCCTCTTGTTTATC
TTGCAGAGGTTGAATAGTGCACTAAGTACCTACATAACATTACAATTTTAGAAACCTTGGTTTG
GGAGTAACCGACAGACAAAAGCTATCTCCATACAAGTCAAGAAGGTAACCTCATGATGGATCTG
ATAAACAAGAGGCCCTTCCTTAAGCTCAAGGTTGGGGATCAATTGCTTGATTGCATCTGCACGC
TGAAGATTTTCCAAGCAATTTGGATCCGTGGATAAATGATTGGTGCATTCCAGTATCTGGACAA
ACAAAAGGTATTGTAAGCATACGACCTGAAGATCCTCTAAACCACACATCCAAGCTTGTCCAAA
GAGTATATGAAGCACCGTCAGAGAAGAAAAACAAAAAATATATTTTGAAGTACCTTTAACAGAA
TAGGAGGTTCCACACGGTTGAACATCTGGAAAAGACGACTGAGTAAACTTTGGCTGCACATGTA
TGATTTTACTGTCGTTTCAGCTCGGGCAAATTCAAGAAGCAGATCAGCCACTTTCTCCAAGTAA
TCCATTGAGACATCTGCACTCAGCGCATGGGCAAGTAAACCAGATGATGTGGTACTTCCAGGTC
TAGCATTTAAAACACCCGAACCTGACAGAACACCAGATGCTGTCTGAGATGCAATCCCACACGT
AGATGCGACTCTCTCAATAGCCATAACCTTCTTAGTCATCGTCTTGCTGGAATATCTTGGCGCA
GTATCAAGATTTCCGTTTTCCTTTCCACGTCCAGAGACTTCTGAAGTAATCATATGCAACAAGC
AAAAACATGATCATATATGTGCTTACAATATGAACAGTCTTCCTAAATATACAACTTAAGAAAA
TTACCTGCAAATTCAGCCATTATAAATTCTAGGTCTCCATTGGTTTTCTTTTCGTCTGATGCAT
ACAAAAGAGGAAGTCTACTTTCATGCCTCTCTATGCCAGCGATATGCTTTACGTAATCCAGTTG
ACCAGAAATTTTTCTTGAAGGAGGTTCTTTCTCCAATAAGCTAAGCAAAGGTCGAACTTGATCT
GGCTGAGTAACAGGAAAACCATTAGACGCACCCTCCGCCAGTTTCTGAAGCTTATCTGTTGATG
TTCTATTGGCAGAAAGAGATATCCTATGTTGTTGTATAACATCCTCTGTGGCATCTGCTACAAC
ACTGCTTAATCTAGGCCTATCACCATCTGGGTGCAAGGCATCGGGTTGATGGACATCTGAACTT
TGAGAATTTGAAGTTAAAGCATGAGAAGGCTCTTCACCACCCCCATTCCTAGTTTTCAACCCAT
CAGGATGATCAATCACACTAGGTGAAGTCTCACGCTGACTAAAGATAGGATTGTTAGGGTCAAG
TTGACCAGAGCGTGCTCGTGGAGTTTGACCATCCAAAATCAATGCATCCCCCGATATAGAAGCC
AGTCGAGTTGCCTCACTCAAGCTATAAAGAGTGTTGACTAGCCTAAGAAGAATTCCATTCTTTG
CAGCAATACGGCAAAAATCATTTCTCGAGGTGGATTTTTTGAGTTTAAATACCTGCCACATCCC
ATCAATAGCCAAGTGAACCATCTCCCTGGACAGAAAAGCTCAAATCAGTTGAACTTAGTAGCAC
ATAAAGAGCGAAAAGGACCAGAAATGATTCAAGAGAGATGAGCCAAATTAACAAAATGGTCAAA
TATTGAGAAATGCATCAGCCATTTTCAATAGTAGAAACACACATCACATAAATTAGGCAGGACG
ACAGGTTCAAAACAAAACCAGATGCTGCTGGGACTGGTAATAACCTAGGAATCACTGCGTGGGA
TAAATTCCAAGTTCTTGTGACGAAATTCTTGATATATCTTACATTAGTTTCAGCACTTTATACA
TTAAAAGTAGTCCATACATTGTAAGAAGATTGTAAACTCTACGCACCTGTGTTTGGCATAGTCT
GCTTCAAGAAATCCCACCAAAACGGGTATTCCACGGCAAGATATGAACATTTGCAACGTCAAGG
GGCTGTAAAGATGCTACCATTATCAACTATATGACTTGCAGAAAAGAAAAAAAAAAAAAAAAAA
AAGAGAGAAGCAAAATTATGTATATTTGATGAGTCGTGACCTTGACTGACAAAGCTGCTGCAAG
AAGTAGGCTGCTTCCTTACGAATTTCTCGTGATCGATCCCTCTCAAAACCAGCAAAACTCATTA
CCAAAGGAATCTGCCATGTCACAAGGAAATAATCAATTTTTATGGGATTTTTGTTATCTACTTG
AGACATCATGAAAACTTAGGTGATAATATAACAACATCATGGGTATATTATCTACGGATTTTCC
CAAAAAGGTATTAGCTGTTGAATTGGATGTTTGACATTTAATATAGAAATGAAGATACGAGTCT
TTGTAAAAACAAATATGCAGATTCCAACGAACAACTGGTGATTCATAAAGTCAGCAACCAAATG
GAGAGTAGGACTTACAAGACCAACAAGACAAGCATTTTCCAGGAAGTCGGTATTATCTTTTACA
ATTTCATTTATCAGCTGCAGCACGGCACATATTACCTGAAAACACCAAAAATATTCACAAGCAT
AAGCCAACTACTGATGATGAAGGACAACAAAAAATCCTGCCTGATTACAACTAAAACATACTCG
AGATTTAGGAATATCGAGTAGATCCATTAGAGGGAGGAAACCATTCTGTGTCACAAATACTGCT
TTCTGCCCAGGTCTCTGACGAAACATGGCAACAAGTTTCAAAGAGGAAGTTACTATTGCATCTT
CTGATTCATCTGGCCTTAAGGAGCTCACCAATCTGCTGAACTCGACTGCCTATAAAAACTTAAC
CAATTAATTACTAAGATTTAAATTCGAACAAGAAAATGAAAACAATTAAAACTGAGTTGAGAAG
CCACGGTTCCTTTTTCAACATCTAATTGCAAATTTTCATCCTCAGAGTATGAAGTGGCTCGGTC
AAGTAGCATTAGCATGATATAAAATGACAAAAGATTGCTAAAAGTTCAGGATATAAATTTACAG
AATACCTGCAGAGGAAAAAGATTCTCCGGGGGAACTTTTTCATCAAATAC
						
					

			
		

Sequences
Splice junction sequence	TGATATAAAATGACAAAAGATTGCTAAAAGTTCAGGATATAAATTTACAGAATACCTGCAGAGG AAAAAGATTCTCCGGGGGAACTTTTTCATCAAATACcttgatgagtttcaggaggttaagtcga gcaatagcatcttggtggtctagtcttgcaatgagtaacggagtcagtccatttaacgctaatg tcttattg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGATGAGTTTCAGGAGGTTAAGTCGAGCAATAGCATCTTGGTGGTCTAGTCTTGCAATGAGT AACGGAGTCAGTCCATTTAACGCTAATGTCTTATTGATTGAAGATGATTTCCTGGATTCAACAA AGAGAAGGATTAGCTCCATACTAACTAATTTTGAAAAGATAGACATTCTATTAAAAAGAGGAGA GATGCATACGTGATGATCTTCAAGAATGGCTCCAAAATGTGCACAAAATGTCTCTCTGGACAGT TCTGGAAAAAGTTAACTAATTTCTGAATTGCATCTTTCTTGAGAAACGCCTGCTCCACCTTTTG GTCAACGTCTTGCGCCAAGCAAACAGCAATTGAATCCAAGGCTATCACGGACCAATATTCATCA TCGAGTAAACTCAGGTAAACATCCAGACCGCCGTGGGCCCTTAACTGCTCTCTTGAATTCCGAG ATGCATGAGCCATATCACAAAGTAGTGGCAATGCATATTGTTTCAGAGGAGAATCCGACATGAC GAAAAGCATCAGGTGCGGAATGATTCCATTTTCAGCAGCTTGTTCCTGCCTCCTCTTGTTTATC TTGCAGAGGTTGAATAGTGCACTAAGTACCTACATAACATTACAATTTTAGAAACCTTGGTTTG GGAGTAACCGACAGACAAAAGCTATCTCCATACAAGTCAAGAAGGTAACCTCATGATGGATCTG ATAAACAAGAGGCCCTTCCTTAAGCTCAAGGTTGGGGATCAATTGCTTGATTGCATCTGCACGC TGAAGATTTTCCAAGCAATTTGGATCCGTGGATAAATGATTGGTGCATTCCAGTATCTGGACAA ACAAAAGGTATTGTAAGCATACGACCTGAAGATCCTCTAAACCACACATCCAAGCTTGTCCAAA GAGTATATGAAGCACCGTCAGAGAAGAAAAACAAAAAATATATTTTGAAGTACCTTTAACAGAA TAGGAGGTTCCACACGGTTGAACATCTGGAAAAGACGACTGAGTAAACTTTGGCTGCACATGTA TGATTTTACTGTCGTTTCAGCTCGGGCAAATTCAAGAAGCAGATCAGCCACTTTCTCCAAGTAA TCCATTGAGACATCTGCACTCAGCGCATGGGCAAGTAAACCAGATGATGTGGTACTTCCAGGTC TAGCATTTAAAACACCCGAACCTGACAGAACACCAGATGCTGTCTGAGATGCAATCCCACACGT AGATGCGACTCTCTCAATAGCCATAACCTTCTTAGTCATCGTCTTGCTGGAATATCTTGGCGCA GTATCAAGATTTCCGTTTTCCTTTCCACGTCCAGAGACTTCTGAAGTAATCATATGCAACAAGC AAAAACATGATCATATATGTGCTTACAATATGAACAGTCTTCCTAAATATACAACTTAAGAAAA TTACCTGCAAATTCAGCCATTATAAATTCTAGGTCTCCATTGGTTTTCTTTTCGTCTGATGCAT ACAAAAGAGGAAGTCTACTTTCATGCCTCTCTATGCCAGCGATATGCTTTACGTAATCCAGTTG ACCAGAAATTTTTCTTGAAGGAGGTTCTTTCTCCAATAAGCTAAGCAAAGGTCGAACTTGATCT GGCTGAGTAACAGGAAAACCATTAGACGCACCCTCCGCCAGTTTCTGAAGCTTATCTGTTGATG TTCTATTGGCAGAAAGAGATATCCTATGTTGTTGTATAACATCCTCTGTGGCATCTGCTACAAC ACTGCTTAATCTAGGCCTATCACCATCTGGGTGCAAGGCATCGGGTTGATGGACATCTGAACTT TGAGAATTTGAAGTTAAAGCATGAGAAGGCTCTTCACCACCCCCATTCCTAGTTTTCAACCCAT CAGGATGATCAATCACACTAGGTGAAGTCTCACGCTGACTAAAGATAGGATTGTTAGGGTCAAG TTGACCAGAGCGTGCTCGTGGAGTTTGACCATCCAAAATCAATGCATCCCCCGATATAGAAGCC AGTCGAGTTGCCTCACTCAAGCTATAAAGAGTGTTGACTAGCCTAAGAAGAATTCCATTCTTTG CAGCAATACGGCAAAAATCATTTCTCGAGGTGGATTTTTTGAGTTTAAATACCTGCCACATCCC ATCAATAGCCAAGTGAACCATCTCCCTGGACAGAAAAGCTCAAATCAGTTGAACTTAGTAGCAC ATAAAGAGCGAAAAGGACCAGAAATGATTCAAGAGAGATGAGCCAAATTAACAAAATGGTCAAA TATTGAGAAATGCATCAGCCATTTTCAATAGTAGAAACACACATCACATAAATTAGGCAGGACG ACAGGTTCAAAACAAAACCAGATGCTGCTGGGACTGGTAATAACCTAGGAATCACTGCGTGGGA TAAATTCCAAGTTCTTGTGACGAAATTCTTGATATATCTTACATTAGTTTCAGCACTTTATACA TTAAAAGTAGTCCATACATTGTAAGAAGATTGTAAACTCTACGCACCTGTGTTTGGCATAGTCT GCTTCAAGAAATCCCACCAAAACGGGTATTCCACGGCAAGATATGAACATTTGCAACGTCAAGG GGCTGTAAAGATGCTACCATTATCAACTATATGACTTGCAGAAAAGAAAAAAAAAAAAAAAAAA AAGAGAGAAGCAAAATTATGTATATTTGATGAGTCGTGACCTTGACTGACAAAGCTGCTGCAAG AAGTAGGCTGCTTCCTTACGAATTTCTCGTGATCGATCCCTCTCAAAACCAGCAAAACTCATTA CCAAAGGAATCTGCCATGTCACAAGGAAATAATCAATTTTTATGGGATTTTTGTTATCTACTTG AGACATCATGAAAACTTAGGTGATAATATAACAACATCATGGGTATATTATCTACGGATTTTCC CAAAAAGGTATTAGCTGTTGAATTGGATGTTTGACATTTAATATAGAAATGAAGATACGAGTCT TTGTAAAAACAAATATGCAGATTCCAACGAACAACTGGTGATTCATAAAGTCAGCAACCAAATG GAGAGTAGGACTTACAAGACCAACAAGACAAGCATTTTCCAGGAAGTCGGTATTATCTTTTACA ATTTCATTTATCAGCTGCAGCACGGCACATATTACCTGAAAACACCAAAAATATTCACAAGCAT AAGCCAACTACTGATGATGAAGGACAACAAAAAATCCTGCCTGATTACAACTAAAACATACTCG AGATTTAGGAATATCGAGTAGATCCATTAGAGGGAGGAAACCATTCTGTGTCACAAATACTGCT TTCTGCCCAGGTCTCTGACGAAACATGGCAACAAGTTTCAAAGAGGAAGTTACTATTGCATCTT CTGATTCATCTGGCCTTAAGGAGCTCACCAATCTGCTGAACTCGACTGCCTATAAAAACTTAAC CAATTAATTACTAAGATTTAAATTCGAACAAGAAAATGAAAACAATTAAAACTGAGTTGAGAAG CCACGGTTCCTTTTTCAACATCTAATTGCAAATTTTCATCCTCAGAGTATGAAGTGGCTCGGTC AAGTAGCATTAGCATGATATAAAATGACAAAAGATTGCTAAAAGTTCAGGATATAAATTTACAG AATACCTGCAGAGGAAAAAGATTCTCCGGGGGAACTTTTTCATCAAATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.172747989

Conservation Information
Conserved circRNAs	NA
PMCS	0.172747989

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2547444-2544156(-)
						
					

						Potential amino acid sequence
						
							MFRQRPGQKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVM
SFAGFERDRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAID
GMWQVFKLKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQ
LDPNNPIFSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSS
VVADATEDVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISG
QLDYVKHIAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTM
TKKVMAIERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLF
QMFNRVEPPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALF
NLCKINKRRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYL
SLLDDEYWSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKII
TKSSSINKTLALNGLTPLLIARLDHQDAIARLNLLKLIKVFDEKVPPENLFPLQAVEFSRLVSS
LRPDESEDAIVTSSLKLVAMFRQRPGQKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVK
DNTDFLENACLVGLIPLVMSFAGFERDRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLV
GFLEADYAKHREMVHLAIDGMWQVFKLKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLAS
ISGDALILDGQTPRARSGQLDPNNPIFSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSS
DVHQPDALHPDGDRPRLSSVVADATEDVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQ
VRPLLSLLEKEPPSRKISGQLDYVKHIAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSG
RGKENGNLDTAPRYSSKTMTKKVMAIERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFAR
AETTVKSYMCSQSLLSRLFQMFNRVEPPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLE
LKEGPLVYQIHHEVLSALFNLCKINKRRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAH
ASRNSREQLRAHGGLDVYLSLLDDEYWSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFF
QNCPERHFVHILEPFLKIITKSSSINKTLALNGLTPLLIARLDHQDAIARLNLLKLIKVFDEKV
PPENLFPLQAVEFSRLVSSLRPDESEDAIVTSSLKLVAMFRQRPGQKAVFVTQNGFLPLMDLLD
IPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVMSFAGFERDRSREIRKEAAYFLQQLCQ
SSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAIDGMWQVFKLKKSTSRNDFCRIAAKNGI
LLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQLDPNNPIFSQRETSPSVIDHPDGLKT
RNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSSVVADATEDVIQQHRISLSANRTSTDK
LQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISGQLDYVKHIAGIERHESRLPLLYASDE
KKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTMTKKVMAIERVASTCGIASQTASGVLS
DVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLFQMFNRVEPPILLKILECTNHLSTDPN
CLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALFNLCKINKRRQEQAAENGIIPHLMLFV
MSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDEYWSVIALDSIAVCLAQDVDQ
KVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKIITKSSSINKTLALNGLTPLLIARLDHQ
DAIARLNLLKLIKVFDEKVPPENLFPLQAVEFSRLVSSLRPDESEDAIVTSSLKLVAMFRQRPG
QKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVMSFAGFER
DRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAIDGMWQVFK
LKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQLDPNNPI
FSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSSVVADATE
DVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISGQLDYVKH
IAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTMTKKVMAI
ERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLFQMFNRVE
PPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALFNLCKINK
RRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDEY
WSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKIITKSSSIN
KTLALNGLTPLLIARLDHQDAIARLNLLKLIK(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2547444-2544156(-)
Potential amino acid sequence	MFRQRPGQKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVM SFAGFERDRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAID GMWQVFKLKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQ LDPNNPIFSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSS VVADATEDVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISG QLDYVKHIAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTM TKKVMAIERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLF QMFNRVEPPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALF NLCKINKRRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYL SLLDDEYWSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKII TKSSSINKTLALNGLTPLLIARLDHQDAIARLNLLKLIKVFDEKVPPENLFPLQAVEFSRLVSS LRPDESEDAIVTSSLKLVAMFRQRPGQKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVK DNTDFLENACLVGLIPLVMSFAGFERDRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLV GFLEADYAKHREMVHLAIDGMWQVFKLKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLAS ISGDALILDGQTPRARSGQLDPNNPIFSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSS DVHQPDALHPDGDRPRLSSVVADATEDVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQ VRPLLSLLEKEPPSRKISGQLDYVKHIAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSG RGKENGNLDTAPRYSSKTMTKKVMAIERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFAR AETTVKSYMCSQSLLSRLFQMFNRVEPPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLE LKEGPLVYQIHHEVLSALFNLCKINKRRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAH ASRNSREQLRAHGGLDVYLSLLDDEYWSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFF QNCPERHFVHILEPFLKIITKSSSINKTLALNGLTPLLIARLDHQDAIARLNLLKLIKVFDEKV PPENLFPLQAVEFSRLVSSLRPDESEDAIVTSSLKLVAMFRQRPGQKAVFVTQNGFLPLMDLLD IPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVMSFAGFERDRSREIRKEAAYFLQQLCQ SSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAIDGMWQVFKLKKSTSRNDFCRIAAKNGI LLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQLDPNNPIFSQRETSPSVIDHPDGLKT RNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSSVVADATEDVIQQHRISLSANRTSTDK LQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISGQLDYVKHIAGIERHESRLPLLYASDE KKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTMTKKVMAIERVASTCGIASQTASGVLS DVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLFQMFNRVEPPILLKILECTNHLSTDPN CLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALFNLCKINKRRQEQAAENGIIPHLMLFV MSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDEYWSVIALDSIAVCLAQDVDQ KVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKIITKSSSINKTLALNGLTPLLIARLDHQ DAIARLNLLKLIKVFDEKVPPENLFPLQAVEFSRLVSSLRPDESEDAIVTSSLKLVAMFRQRPG QKAVFVTQNGFLPLMDLLDIPKSRVICAVLQLINEIVKDNTDFLENACLVGLIPLVMSFAGFER DRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAIDGMWQVFK LKKSTSRNDFCRIAAKNGILLRLVNTLYSLSEATRLASISGDALILDGQTPRARSGQLDPNNPI FSQRETSPSVIDHPDGLKTRNGGGEEPSHALTSNSQSSDVHQPDALHPDGDRPRLSSVVADATE DVIQQHRISLSANRTSTDKLQKLAEGASNGFPVTQPDQVRPLLSLLEKEPPSRKISGQLDYVKH IAGIERHESRLPLLYASDEKKTNGDLEFIMAEFAEVSGRGKENGNLDTAPRYSSKTMTKKVMAI ERVASTCGIASQTASGVLSDVSMDYLEKVADLLLEFARAETTVKSYMCSQSLLSRLFQMFNRVE PPILLKILECTNHLSTDPNCLENLQRADAIKQLIPNLELKEGPLVYQIHHEVLSALFNLCKINK RRQEQAAENGIIPHLMLFVMSDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDEY WSVIALDSIAVCLAQDVDQKVEQAFLKKDAIQKLVNFFQNCPERHFVHILEPFLKIITKSSSIN KTLALNGLTPLLIARLDHQDAIARLNLLKLIK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT3G07980_circ_g.1

Address

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