Detail information of BGIOSGA001893_circ_g.7


General Information
CircRNA Name BGIOSGA001893_circ_g.7
ID in PlantcircBase osi_circ_008929
Alias Chr01:10005535_10010062(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10739237-10743765  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001893
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001893_circ_igg.1 BGIOSGA001893_circ_igg.2 BGIOSGA001893_circ_igg.3 BGIOSGA001893_circ_igg.4 BGIOSGA001893_circ_igg.5 BGIOSGA001893_circ_g.1 BGIOSGA001893_circ_g.2 BGIOSGA001893_circ_g.3 BGIOSGA001893_circ_g.4 BGIOSGA001893_circ_g.5 BGIOSGA001893_circ_g.6 BGIOSGA001893_circ_g.8 BGIOSGA001893_circ_g.9 BGIOSGA001893_circ_g.10 BGIOSGA001893_circ_g.11 BGIOSGA001893_circ_g.12 BGIOSGA001893_circ_g.13 BGIOSGA001893_circ_g.14 BGIOSGA001893_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA001893-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGCCTGACATCAGATGAGAAAGAAACTGGGTCCTTGAAGGGTCCTCAACAAAAATACTGCG
CCTGACAGAAGCAAGTCTCACAAGACATTCCAAAGCcctttgaagaatgcatggcttgatctcc
tacatatgaccttctgaaattttgcacaaagataagaatagcacgaccaagtctttgcttactt
aatactcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGAAGAATGCATGGCTTGATCTCCTACATATGACCTTCTGAAATTTTGCACAAAGATAAG
AATAGCACGACCAAGTCTTTGCTTACTTAATACTCGATATCTCTGCAAAGAATGCACCCAAGTC
ATCATTCACAAATTTGTGAAGCTGTGAATGGTTATAAGAGCAGCTAAAACAGGTTAATGAAAGT
AAAGAACAAATTGGAGAGCATCCTGTGATACGTAGTGTCGCAATACAGAAACAGATTTGGTTTA
TGGGGACAGTATGTGGTTTACATGCTGCACATAATACAATATGAAATATAACTCTCTTAAAGTG
GGCTGGTTACCAAAGGTTAAGTTCATAGGGGGACATTGTTTAGATATTTTCGTTAAATAAATTC
AATTTCAGCCTATTTTTAAGTGCAAATTCACAGCTTCTATTGGTAGCATTCTCATGATAACTGT
AAGAAACACCAAAACACCAACAACCACATGCGTTGCTGTGACTCCAAGCTTCACGACAAATAGA
GAAACGAGTAATTGGTTATATATGTTACAGTATTGGCGATAAAAATAAAGTTGTAAGTTATTTG
CATTACAGTACTAGAAAATATCTATGTTTGTCAAAAAACAAAATCAGTCCTACCTACATATGCA
ATTATATTCTATAATTTGCAGACAATACTAGAAAGGAAAATTGTTGTTGCTACAAGTACACTAG
CTCAGCACTCAGCATTGATGTTAGATGACCAAATCATTTTCATCTAACCTGTGCGTGCACCCCC
GTGTCAGTAACGTTTATCAACTGTAACACACGGGCTGCAAGTTCTGCATCAATTAACTCCTGTG
ATTCTTGGCTGCATGAAAAAATGAGCATTGTAGGTGAAAAAAAAAGGAAATCAAACAGAATATA
AGGAAGCAAGGAATGTTAATTTCTAACCTACAACCAATGGTCTGCCTAATCTTGAGAATGGCTG
CAATTATGTGGACTAGCCATGTGAGCTGTCCTTCAATGACAGAGAGCTCATTCGCATCTCCAGG
AGCTGGTAATCTTGACCTTTCCTGTAAAAAGTATTTGGCTTTGAAAAGGCATTCTTTCTGCCCA
AAAAAGAGGACTGTGAAATAACACTAACATACCGTATAAGCTTGTAGAAGAGGCTCCATAATAT
TTATGATGTAAATGCTACTGTTTTGGTACTGCAAATCAGCAAAAGAAAATCATGTTATGGCCAT
GTCATATAATGCAACTCCCTATAAAAAAAAAAAAGGCCTAAGAACAATAAGGGCATTTCATCTA
GCTTCTTCGTACTATTGGTAACTGGCAAGGAGGTTAGTAGTGACTCAAAATAATTATATAAAAA
TTCCATCCGGACAAAAATAACAGATATATATAATGAAGTGGCGTAATAAATTAGCTGAAAACAG
CAGAAATGGTAATAAGAGATCTTCATCTGTTTGAGAGGCACAATGTAGATAGCTAAACTCACAT
GTTGGCAAGCTAACATACATAATAAACATAGGATGTGTACACAACACTTGCGAAGGCTCAAAAC
TGCTAAGTTGCATGTCTATCCACAGTTGCCTTTATTCTTGACCATGTCAATCGGGAAGGGCTGA
CGACCACATGAAGTGCTTAGAAAATTTCAATCAGCCAGTTTCCCATAACAAAACAAATAGCTAC
TGTTATACTGGAACATGAGCATCTGATCACAGCCATTGACCCCCCCCCCCCAACCGCCCAAAAA
AGAAAAATGCAGAGAGAAACTGGTATCTTTCCTTTTGATCCATCCAATAGCATTTCTAAATTTG
TCAAATTTTTTATCTTATTTACTATATTTTCTGCACCCGTCCAGAATATGAAGTTGAACAACTC
AACAAAGCACTTAAGTTGGCCAAAAAATTACTCTGGTTATTCTTGTTTTAGAATCGTATAATTA
AATACGATAAAAAATGAATAGCATAATGCAACTTAAATTTGATGCATCTACAGTTGTTGTATCA
TTCTATTAGTTCTCCATAACTTAAAGAAAGAAATTCTAGTGCCATATACAAGAAATTACTAAGT
GCATGCAGTAAACTGCAAGTAGATAAAAGTAAAACCAATGTATATGTTCAATAAAAAAAATCAA
TTACATAAAACTATGAATCCTGTTATGTGAAAAGCTGGAACAGGGTTAATCTCCATAAAAGAAA
ACATTCAATTGATTAAGCAAGGTATCTTATCTACAGGTGGACATGATTACAAAGATGGATCCAA
TCAAAAGTTTAACAGAAAATTGTCTCTTAAATTGGAAACCAGAACTTGACAGGAAATGGCGACC
TGGAATCTACAAAGGTAAGGAAGAGACTCCAACTGCTCCTGAAGAACATCCACATTATCCAAAG
TATCATCGGATGAGTCGTTTGCAAAGCTGGCCTGAGATGGATAGAAACAACAGAATATAACAAA
CGTTACTCTTCAACTGAGAATCTGAGATAGAAAGCAGTTCCATCATCTCATTAGAAATCAGTAC
CTGAACAGAATTAATTCTAGAGGTGATAAAACCCTCCGTGATTTTGGGAACAGTCTCATCAAGC
ATACTTGGTGTGTCACTTTTCAAGTAAGGAACAGATGTCACCAGCCTTGACCAAAGGCTCAAAA
GATAGTAGACACTATTGCTGGCCCACTACAAATATTCAATAGTTAGAACTATTGGAAATTAATT
ATTGAATAATCCAGTGCTAAGAGAATTAGTCAAAAAAAAAAAGGGAAACAGACCTGCCATGACA
ACAAGGATTTAGTTGTGAATTCTGCTACTAAACCAATCCATTCACCATAAAACTCAATACTCAG
AAGCTCTGACAACTGCGAAGTACAACAATGCAAGAATCCACACTTGATCACAAAGAGGTCCATT
CATAGCTTGAATATTACTATGATAATAACAGAGAACTTGATAAAGGATCATAAATGAGTGCAGC
CAACACTATCTAATACACAGGTAACAATCAACCAACCAAATCATTTGGTAGTCAAAATGCCGGG
AGTATTCCGAATGTCACAATGAAGATATGCCAACAGAAAACAAACATAATACAGTTCAATTTTA
TTTTCATGATCAACATAGACTAATTTACATAACTACGTTATTATCAAAGTTCTAAATAAGAAGG
AATGGTCATTATGGCAAATTTTGAATGTGGTAAGAAAATATTGAACCATGCTTTTTGTTCCAGA
AAATATACAATAGATACAACTTAACAAACAGTAAGTTAGTAATAGGCAATTGGGACAAGGAATG
CATATAGAAAAATGGTAAAAGAAAGTTTGGAACAATGGCCATCTTCAGTTGACAACACTATTAC
ACAGGTATTAAATGCTCCGTTGTTTATTGAAACTTTGAAAGCTAATAAATTGGTACCAAATGTC
TGCAAGGCAAAAAATTAAAAGAAGATGCCAACAAAAATAGCACTTGCAAGTTGCAAACATTACC
AAAAATACATAAAAACATCATAAACACAATAGTTCACTTCGTAGAATTATAATTATGATACAAA
TTAACTATTCCATCAACTGTTCACTACAACATGCACTGCATCATTACGATATGCTCTACATCAA
AACCAATGCACTATAAAAATGCAATCCACTAGTTAGTGCATATCAGTAAAGCCAAAAGACTAGA
AGCTACAAACCATTGGATTTACTTATTACTGTTCCTTCAAAGCAATAGTACAAAAGTACAAATC
AGGGTAAAATAACATCAGTAAGGCGTGTTTGGAATCCCACAAAATCCCCACCATCGCAATTCAT
TTCAGTCAGGATACCAACCAGAATTAATGCATCACTACTGTTGCCAACTAATTCATCAGTTGTT
ACATACCAAAAACTAGCAAGTCAATAATTCTGTAAAAGAATGCAAAGAGAGAGAACGAAGAGCA
AATCCTTGACACAAAACAAACAAGAAAAGTTAGCTTCATCCTTCATTTTAAGTAACAGGATTCC
AACCTGGAAATTCACTTTGAACCGTCCAAGAAGACGGCAGAACTCGTGGTAATTTCCATGATCA
GCAAGACCTGCAGATGAGCAGATCACACATCAGAATAAATTACGTAAAGATATGGAGCATTTAT
TTTTGTTCCTGCATGGAGCTAATTTGACAGACAAGTACCTAAGTTTAAAGATTACTATTGCATT
TATAATGAACCAATGTGTGCTTTTACTTATAAAAAGCAAGTCTGGTTTCTACAGTGCACCACAT
AGCGTGACTAGGCATGAGTCAATCAACTCATGTTTTAAATGCTTCTTCACTTTACATAAAAGAG
GCTTTTCACTCCATGTAAGAGGATTGCAATTGAAACCGCTGGTCCAAGTAACTGAAATTTGTAA
CAGGAGTACTACAATAGAACAGAACTTGGCAAAAAAAGGACAAAGCGTTATACCTTGGCCAGTT
TGGAGTATCTCCTTTGTGCCTGACATCAGATGAGAAAGAAACTGGGTCCTTGAAGGGTCCTCAA
CAAAAATACTGCGCCTGACAGAAGCAAGTCTCACAAGACATTCCAAAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021