Detail information of BGIOSGA037668_circ_g.2


General Information
CircRNA Name BGIOSGA037668_circ_g.2
ID in PlantcircBase osi_circ_003495
Alias 12:19509670|19511618
Organism Oryza sativa ssp. indica
Position chr12: 19509670-19511618  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA037668
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA037668_circ_g.1 BGIOSGA037668_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA037668-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCAACGCAAAAGAGAAAAGGTTAGCCGCAAGTACACACAGCCCGCCAAGCAAAGAAGGCAG
CTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAGgtggttggtgcactatgtggctatccat
atgatatatgagcattgttgcagtgtgaaagtaatgcgcgcattgtaaaatggaaagatgggac
catgcagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGTTGGTGCACTATGTGGCTATCCATATGATATATGAGCATTGTTGCAGTGTGAAAGTAATG
CGCGCATTGTAAAATGGAAAGATGGGACCATGCAGCTGCTGATTGGCAATGAAGTTCTTGATAT
ATCTGTTCATGAAGCACATCATGATCAGTCCCATCTGTTTCTGAGGAATGGGAAGGTAAAGTAC
TTCTTATCTGCAATTCAACAATGTTTGCTACCACCTCTGTTCATTCATGCTCTTACTGCATAGG
TGTCACTAACCTGATATAATTTTGAATTATAATGCAGGGAGTCCTTCAATCACAAGGAAGGCTC
TTACGGAAAATGAGATTCATGCCATCTTCCTTGTCTTCGAAATCACATCGTTTATTAACTGCTC
TTGTTGATTCTCAGAATAAGAAAACGGTTAAGATGCAAAAATGGATCGAATCTAAGGATCCAGA
GAGAGTGAAGCAGGAAAAAGAAAGGGTAACGAAAAACTCCATTTCTTAATACATTGGATGTATA
TGCAACACTGAATGACATGTGCATGACTTACATTTGCCCCAATGCTGCTTCTCAAAAACAACAT
GATTTCTGTTGTGTTATATTCTCACTTTCCATTTGTTTCTATAGGGGCCATGGGCTTGACAAAA
TATGTACATTTATATTTTTTTTCACCTATTTCTTTAGATTATAGGAGTTGGATGCATGTAATAC
TTAATAGAGTAGAGTAATCAGTAAAATAGTCAGAATGCAAACTTCAAATTAAGTAAATATAATT
TCGTATCTGACCATGAGAGATTTGAGCAGACACTGAATTTGCACCAGATAACTGACAAATAAGT
AAATAGGAGCATAACTGGTAAGCTAGTACCATTAAGGAAATGCTACTAAAGTTCTAATGTTGCA
AACTACAAGAATGGTCTTCTTCATGGAAATATGAGCTTCAAATTTGGTTATTCTTGGGCGCATA
GCTAGTCAGGATCACTATATAAAATGATTGAGAGGACAGTTGATGCTTTTAGAGCATGATAATC
AGCAAGCAAATTTAGAGCATGGCAATCAGCAAACAAATTGTTTTTCTTGGAGTACAAACATGTA
ATAACATTTTTAGCTATATAGTGGGTAAATAGATGATTCTCTAAAAACATTATGTGCAAATCTT
GGCATGTTGATTGTAAATCTCTTGAACGGTAAAGTGCAAGATTTTCACCATATTTATCCTAAAA
ATAAAGATGTAATCATTATGAAGTCATTTGTATGAGTTACACGATCTTGCTGCTTTCTCTGTTT
TTTTTTCCTTTCATGATGAGAGTATGAGTTCTAAGATTAAGAAATTTATGTTGTCAAACCAACA
AATATCAATGTGATATCAGAGGTCCCATTATCCAACAAGACTGCAATTTGTATTCAGAAAATTC
TCTTGTTTGTGTGTTTTCCGTTTATCTTGCATGTTTTTCTCCAGTGCATAAGCAAGCATTAATT
AGCATGTTGTTTATGGATTTTAAACTTAATTTTTGTGGCAGTTAAACACACATTCTAGATCCCG
TGAATTTCAGCTTTGATCTGCGGGTCTAAAAGTTATTGTAACATGATTTGTTCTTAGTGCTACG
CTGTATAACATTTATTGTGGCTTGCTCCAGTGAACTTTTCACAAAAAATAAATCACATAGGGTG
AAGTTTCCTTTTATGAAGGTGCAATAACCAAATAGTTGACATACCGATTTAATAAATGCATTTA
ATCCTGTTCGTGCTTTGCTGTATTTCCTTTCTGTTCTAAACTTGTTATATATGCATTTTGAATG
AAGTTTGTCCCTTTTCACTATGCAGGCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAA
CGCAAAAGAGAAAAGGTTAGCCGCAAGTACACACAGCCCGCCAAGCAAAGAAGGCAGCTTTCTC
CCGGATTTTTGGAAGATGCATTAGATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021