Detail information of Os01g0779100_circ_g.1


General Information
CircRNA Name Os01g0779100_circ_g.1
ID in PlantcircBase osa_circ_004205
Alias NA
Organism Oryza sativa
Position chr1: 32988416-32989994  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0779100
Parent gene annotation Peptidase M16, zinc-binding site domain containing protein. (Os0
1t0779100-00)
Parent gene strand +
Alternative splicing Os01g0778800_circ_g.1 Os01g0778800_circ_ag.1 Os01g0778800_circ_ag.2 Os01g0778800_circ_ag.3 Os01g0778800_circ_ag.4 Os01g0778800_circ_ag.5 Os01g0778800_circ_ag.6 Os01g0778800_circ_ag.7 Os01g0778800_circ_ag.8 Os01g0778800_circ_ag.9 Os01g0778800_circ_g.10 Os01g0778800_circ_ag.11 Os01g0778800_circ_ag.12 Os01g0778800_circ_g.13 Os01g0778800_circ_ag.14 Os01g0778800_circ_ag.15 Os01g0778800_circ_ag.16 Os01g0778800_circ_ag.17
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0779100-00:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCACCAGAAGAATGGCTGGTTGGAGCATCATTGCCGTCCAAGTATGCTCCAAATAGAATAAA
TATGATACTTGATGAGTTGTCAGCTGAAAGAGTAAGcttgttatcaaagctatcccgatatctg
aaggcgattacctaaacatatcatggcctgttacacctaacatccacttttacaaagaaggtcc
ttcccatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTTATCAAAGCTATCCCGATATCTGAAGGCGATTACCTAAACATATCATGGCCTGTTACAC
CTAACATCCACTTTTACAAAGAAGGTCCTTCCCATTATTTGAGTCACTTAATTGAGCATGAAGG
CGAGGGATCCATCTTCCATATCATAAAGGAACTAGGCAAGTACATTCACCAGTTGATTGCTGTA
CAACTCTTTTGCCTCCCTTATCTACTCATAGTCACTCTAGTTTATTCTTTCTACATGTGAAATA
TGCTCAATTTTGACTACTTTAGGATGGGCTATGAATTTGTCGGCCGGGGAGGGCAGTGACAGTG
CCCAATACTCCTTTTTTTTCAATTAGCATGAGGCTCACTGATGCTGGTCATGGTCAGCTTCTAT
CTTTAATTATAACTAACATGGCTATTTTGTTTTAAGCACATTTTGTTATTATTTAAGCCTCTTG
CGTGCACATGCAATGATTTCAGAACACATGGAAGACATCATTGGCTTGGTCTTCAAATATATTC
TTCTACTAAAAGAAAATGGGATCCATGAGTGGATCTATGATGAGGTAATTGCAAAGAACATGGC
TTACGCAGTGTGTAAATCCATGTTTTATGGTTAGAAGTTCTGATACTTCTACGACTTCTGATCT
TTTCCTCTAGAGTTCCCAAACTACCCAAACAAGAGTTATTCCACATAATTGAGTTTCTGATCTT
TTCATATCTTGATTGGAAAAGTTTTCTTTAGGAACGTCAGTTGACCTTTGTTGGGAATATTTTA
CAGGTTTTAATCATTCAGTGAATTCTATAAGGAATATAAATTTTGGTTAACAAATGGGATATTT
ACCGAATAGGAGTATAGGACCTGTTAGTTTTGAGAACTTATGAGGGTTCAGGACAGATGTGCTT
CTAATTCTGGACAATAGACTCTATCAACTACACTACAACCATTTGCATACAAGTCACGTTCCAA
AAAAAAAGAAACATTTGCATATGAGTCGTACTTTCTTTTAGCAAGATCTCATTATGTTTCAAGT
TATCATCTCATCATCAACAAATTCAAACATCACTTATTTATAGTATCAAGCTTTTTCTACATGT
CTTGAGCATATTGGGATTGATTTAAATAGATAAACTTAATGTGATGGTAACATGTTTTTGAATG
TGTTAGCTTGTGGCGATAAATGAAACGGAATTCCATTATCAGGACAAAGTTCATCCAATCAGCT
ATGTGACAGATATTGTAACAACCATGCGGGTATACTTCTCAATACCTCATTAAGTACATAATGT
ATGGTTTGCAATTCCATATGATCAATTCTATTCATTGCTGATACACCTCCCGCAAAGCATTATG
TGATAACACCGATTACCAACTATTCTATTGTCTAAATTTTCAATGTTGTACTGAAATGTTGGAG
AAATGCACCTTTCATCTGTAGTCCATTAGCTATCTTCAATATGAAAGATCTTTTGAACTGCTTG
CAGTCATTCCCACCAGAAGAATGGCTGGTTGGAGCATCATTGCCGTCCAAGTATGCTCCAAATA
GAATAAATATGATACTTGATGAGTTGTCAGCTGAAAGAGTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.419529949
Functional Information
Coding potential Y
Potential coding position 32988877-32988455(+)
Potential amino acid sequence MISEHMEDIIGLVFKYILLLKENGIHEWIYDELVAINETEFHYQDKVHPISYVTDIVTTMRSFP
PEEWLVGASLPSKYAPNRINMILDELSAERVSLLSKLSRYLKAIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017