Plant Circular RNA Database

Detail information of 3_circ_igg.2

			
						 General Information
					
						CircRNA Name
						3_circ_igg.2
					
						ID in PlantcircBase
						ath_circ_023884
					
						Alias
						At_ciR285
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 9634133-9637972  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							3_circ_ag.2 AT3G26290_circ_g.1 						
					
						Support reads
						10/7
					
						Tissues
						leaf/inflorescences
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	3_circ_igg.2
ID in PlantcircBase	ath_circ_023884
Alias	At_ciR285
Organism	Arabidpsis thaliana
Position	chr3: 9634133-9637972 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	3_circ_ag.2 AT3G26290_circ_g.1
Support reads	10/7
Tissues	leaf/inflorescences
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTGAAGAGCTCTTGAGTACAGAGCTTCCTTAGCTCTTTCCAATAATCATTGTAAGGAGAGAAAG
ATATGTCTCGGTTGTTGTAAGAGAGCTCTCTTCCCCctgctaaggaaggacggctacaacaatg
gagatcatagtctcttagagcttgttttgctgtttctgatgaagaaagtatgagtgtggggact
tttccaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCTAAGGAAGGACGGCTACAACAATGGAGATCATAGTCTCTTAGAGCTTGTTTTGCTGTTTC
TGATGAAGAAAGTATGAGTGTGGGGACTTTTCCAAGCTTCAAAAGCATCACAGGGCCATACTTC
TTTGAGAGCTTCCATAGAGACTGATGTTGTAATTCTCCGAGCTGATGTAAGTTTCCGATGATTG
GAAAACCAGGAGGAGATGGTATTCGTCGATGTTTCCCATGATTTTTGCGTTTGAAGGCGGCCAG
AAGAAGAAAGATGATGAAGAAGAGAAGTGATAGAATCCAAATGCTATCCATTTGTATGTTATTT
TGTTTTACTGAGATATTATGAGTCATGAGGAAAGCTCATGGCTTAATATATACAACTTTGAGCA
ATGCTCACTTCACTAATTTAATTCATGAAGTCCACTTAAATATTTGACAAAACATTTATGTGAA
TAATTGATCACTGCATAAGAGAGCAAAGCTAACCTACGATACTAACGTTGACATTTTTCTTTCT
TTTCTTCTTGCCATTATGTTATATAAACCACAATAATGAGCTAGAACCGTGAAATTTAATACAA
ATTATGGAGACATTTCAACTACCTTGTCATCATCGTAAATAGTATCTTCTTAATAAAACAAATA
ATGAATTAAAGGAAGTGGCCGAAGTGGGGTTCACGAAAGATAGATATAACAATATATGGTCCAG
ACAACTTACTTAGAAGAGTTTTATGAGAATACGAAGTTTTTCACAAGACTATATAGCATATCTC
TTTTTTTATCTATATATACTGTATAGTCTGTCTTTTTCAATGAGACAAAAAAAATATCTTTACT
CATGGTTCACATTAGTCGTAAAATATGCGCTGGTTTTTTAAAAACACAAGGCGACATCACATAC
TTTCGTCTTGCAGTGGATTTATAATTACAAGGCGACATTAGATATTTTGCAACTAAACTTCTGG
TACCAAATATTGCTACGTGTTAATAGAGTCGTGTTAAAATTTTGGATGGAATTGCCATCTTACT
GTTTCGTCGCACCCTGGTAAAATTTAATGACCAAATATTCATCGTTAAAAACGATGTTATTTTT
TTGTTATTTATTAGGAATAATATGAGCAAGATGGATTTTGCAAACAAATTACACTATGGGTTGT
TAAAGCCAATTTTCAATAAATACTAGGTGATTACCGTGCTATACTATCGATTTTTTATTTTATT
TAATGTGATGTTTTGATAAATGTAATTTTTGTAAAATTTAAGGCTTATTTTTGTAAATATTTCT
AAAAATGAGAAAAACAATGAAATTAGAGACTTGGGGTTCGAACTCTGCATGTATGCGTTTTACC
ATTAGCCTATTTAAACAGTTATGTTAAAATAGAGGCAGATTACATATATAACGAAATAAGGGCC
GCATGCATAAACTTTCTTTATTTGGCCTCATGGACGGTTATATTTAAAAGATAAAGATATGTTG
AGAATGATGTAGAAGATAATGAGCTTGGGACATGCCTAACTGCATATATTTTCTTTCTGAAATA
TATGTATGTAACAAGTGCAGTGCGAGATTTGATCCCAAAAAAAAAAAAAAAAAGTGCAGTGCGA
GTATATTTCTATCTTTAGGTTGAATTTGGCTGTCGAGGACACAAACTTTAGATGTCATCATATG
ATTAATTAAGCTTTCTTCTTCAATTTATTTAGTACAATAGAGCCAAAATTACTTACAATGCAAA
AGAATCTTCACGGCCAAATATAAGTTGCACAAATGGAGAGAAACAAAAGAACACAAGATTTAGT
TCATGATGAACTTAACTTAAGAGACCAATGATCTAACTTCCTGTTCAAGTTAGCCGGAGTTTTC
TAAAAGGAAATTGAATCGGTCAGTTGCCAATGGAAGACAGCTACAACAATGGAGGTCAACAGAG
GAAGAAACTACGACCGTTGGAACTGTATCAGGCTTCAATCGCATCACATCCTCACAAGACCATA
CTTTTAGAGATAGATTGATAAGGCAATTCTCCAAGTTGTTGCAAATTACCGATGATTGAAAACT
TTGTAGCGCTCAGAGGAAATTTAGAGTTTTGATTGTTTGATCAGTTTTAAGAAGATTATGGAGA
GGAGGGATAGCCATTTTTTATTGATCAATTATTTGGTCTGTGTACTCTGTGTTTTTTTGTTAAA
CAAAATGGCATACTCTGTTTCTCTCAGAGTTTTAATGAACCAGTGTTATATAGCACTTTATTAT
ATCTTTTGCTCAAATTTAATATATCATTTATACTATTCAACTGAAACATGTGTGTTATATTGTG
TCGAACATAGTTCTTCTGAAAGCTGATTGTAAAGTTGACGTGCACATTACGTTACATTTCTTTC
TCATGGTGTGACTTGTGATGTACGTTACATCTTCATGGCTAAAAGAAAATTTCACAAAAGAAAA
AGTTTCTCTCTCACATTTCCTTAAACACATAGTTGGCTAACTAAAGAAACAGAGGAACATCAGA
TTTTGTGTTCTGTTTAGGTATAATCGATGCTACACTTATTCTGTAATCTCATGATGAATTTAGT
TCAAGAGTTCAGTTGTCTAAATACTTCACTGGCACAAGTAGAAGGTCATTTTTCTTGTTGACAG
TGAGTCCAGGAGCTTCTTCCATGTCCATATCTTCAACCTTCATGCCTTCTGGTAACTTCCAATC
AAAATGATACAAAAGATTCGCAAGACCAAACTCCACCATTGTTGTCCCCATGTACATTGCAGGA
CACATTCTCCTGCCGCCTCCAAACGGTAGCAACTCAAAGTTCTGTCCTTTTGTATCAATATTAC
TATCAATAAACCTCTCTGGAAGAAACTCCTCGGGATCTTTCCAGGTATTGGGATCACGTCCGAT
AGCCCATACATTGACATGAATCTGTGTCTTGGGTTGCATCGTGTAGCCGTTGATCTCAAACTCA
GACATTACTTCTCTTGGAAGAAGAAGAGGTGCTGGAGGATGTAGCCTCCATGTTTCTTTAATCA
CCGTTTTCAGGTAATGAAGCTGCTCTATGTCTTCGAAGCTGATTAGTTCTCTGTTCTCAAATTT
GTTTCGGATTTCAGATTGAACTTTCCTCATCACTAGTGGGTTCTTCGCAAGTTCTGCCATCGTC
CATGCCATGGTTCCTGCAGAAGTTTCTATCCCCGCTAGAAGAATGTCCTGTTACAAGAACATTT
ACTAAGTTAGAATACAGAACATCTTACCATTGGATTTTGAGTATTTTATTATTAGTTACCATCA
AGATTGCTTTAACATTGTTTCTTGTGAAATTGTTATTTCCAACAACAGTTTCTTCTTTCTCCAA
TTTCAAAAGCAAGTCCACAAAATCTTCACTTCCTACTTCCTTTTCTTCTTTATGCAAATCAATA
ATTTGTTCATAGAACGCATCGAGATCTCACACGCTTTTTTCTCTCCGCCCTTGCAAGCCAGTGA
ACCGATCGATGATCCAACCTATGTACGGTATAAAATCTGAGGCAGAGAAACTTCCCAACATTTC
GAATGCTTCACGGATTAACTTGTTGAAACTGTCATTGCTAAGCACAGTTCCTTCAAAACTCACA
CCAAATGCTATCCTACATACTATACTTACAGTTAAAGCAAGACACTTCTTGTTCAAGTTTATCG
GAGTCTTTAAAGAAGCTGATTCCGCGATTGAAACGATAAGTTTCTTGACCTCCTCGTCCTTGAT
GTGTTGTGTTGAGTGAATATTTTTAGCACTGAAGAGCTCTTGAGTACAGAGCTTCCTTAGCTCT
TTCCAATAATCATTGTAAGGAGAGAAAGATATGTCTCGGTTGTTGTAAGAGAGCTCTCTTCCCC
						
					

			
		

Sequences
Splice junction sequence	CTGAAGAGCTCTTGAGTACAGAGCTTCCTTAGCTCTTTCCAATAATCATTGTAAGGAGAGAAAG ATATGTCTCGGTTGTTGTAAGAGAGCTCTCTTCCCCctgctaaggaaggacggctacaacaatg gagatcatagtctcttagagcttgttttgctgtttctgatgaagaaagtatgagtgtggggact tttccaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCTAAGGAAGGACGGCTACAACAATGGAGATCATAGTCTCTTAGAGCTTGTTTTGCTGTTTC TGATGAAGAAAGTATGAGTGTGGGGACTTTTCCAAGCTTCAAAAGCATCACAGGGCCATACTTC TTTGAGAGCTTCCATAGAGACTGATGTTGTAATTCTCCGAGCTGATGTAAGTTTCCGATGATTG GAAAACCAGGAGGAGATGGTATTCGTCGATGTTTCCCATGATTTTTGCGTTTGAAGGCGGCCAG AAGAAGAAAGATGATGAAGAAGAGAAGTGATAGAATCCAAATGCTATCCATTTGTATGTTATTT TGTTTTACTGAGATATTATGAGTCATGAGGAAAGCTCATGGCTTAATATATACAACTTTGAGCA ATGCTCACTTCACTAATTTAATTCATGAAGTCCACTTAAATATTTGACAAAACATTTATGTGAA TAATTGATCACTGCATAAGAGAGCAAAGCTAACCTACGATACTAACGTTGACATTTTTCTTTCT TTTCTTCTTGCCATTATGTTATATAAACCACAATAATGAGCTAGAACCGTGAAATTTAATACAA ATTATGGAGACATTTCAACTACCTTGTCATCATCGTAAATAGTATCTTCTTAATAAAACAAATA ATGAATTAAAGGAAGTGGCCGAAGTGGGGTTCACGAAAGATAGATATAACAATATATGGTCCAG ACAACTTACTTAGAAGAGTTTTATGAGAATACGAAGTTTTTCACAAGACTATATAGCATATCTC TTTTTTTATCTATATATACTGTATAGTCTGTCTTTTTCAATGAGACAAAAAAAATATCTTTACT CATGGTTCACATTAGTCGTAAAATATGCGCTGGTTTTTTAAAAACACAAGGCGACATCACATAC TTTCGTCTTGCAGTGGATTTATAATTACAAGGCGACATTAGATATTTTGCAACTAAACTTCTGG TACCAAATATTGCTACGTGTTAATAGAGTCGTGTTAAAATTTTGGATGGAATTGCCATCTTACT GTTTCGTCGCACCCTGGTAAAATTTAATGACCAAATATTCATCGTTAAAAACGATGTTATTTTT TTGTTATTTATTAGGAATAATATGAGCAAGATGGATTTTGCAAACAAATTACACTATGGGTTGT TAAAGCCAATTTTCAATAAATACTAGGTGATTACCGTGCTATACTATCGATTTTTTATTTTATT TAATGTGATGTTTTGATAAATGTAATTTTTGTAAAATTTAAGGCTTATTTTTGTAAATATTTCT AAAAATGAGAAAAACAATGAAATTAGAGACTTGGGGTTCGAACTCTGCATGTATGCGTTTTACC ATTAGCCTATTTAAACAGTTATGTTAAAATAGAGGCAGATTACATATATAACGAAATAAGGGCC GCATGCATAAACTTTCTTTATTTGGCCTCATGGACGGTTATATTTAAAAGATAAAGATATGTTG AGAATGATGTAGAAGATAATGAGCTTGGGACATGCCTAACTGCATATATTTTCTTTCTGAAATA TATGTATGTAACAAGTGCAGTGCGAGATTTGATCCCAAAAAAAAAAAAAAAAAGTGCAGTGCGA GTATATTTCTATCTTTAGGTTGAATTTGGCTGTCGAGGACACAAACTTTAGATGTCATCATATG ATTAATTAAGCTTTCTTCTTCAATTTATTTAGTACAATAGAGCCAAAATTACTTACAATGCAAA AGAATCTTCACGGCCAAATATAAGTTGCACAAATGGAGAGAAACAAAAGAACACAAGATTTAGT TCATGATGAACTTAACTTAAGAGACCAATGATCTAACTTCCTGTTCAAGTTAGCCGGAGTTTTC TAAAAGGAAATTGAATCGGTCAGTTGCCAATGGAAGACAGCTACAACAATGGAGGTCAACAGAG GAAGAAACTACGACCGTTGGAACTGTATCAGGCTTCAATCGCATCACATCCTCACAAGACCATA CTTTTAGAGATAGATTGATAAGGCAATTCTCCAAGTTGTTGCAAATTACCGATGATTGAAAACT TTGTAGCGCTCAGAGGAAATTTAGAGTTTTGATTGTTTGATCAGTTTTAAGAAGATTATGGAGA GGAGGGATAGCCATTTTTTATTGATCAATTATTTGGTCTGTGTACTCTGTGTTTTTTTGTTAAA CAAAATGGCATACTCTGTTTCTCTCAGAGTTTTAATGAACCAGTGTTATATAGCACTTTATTAT ATCTTTTGCTCAAATTTAATATATCATTTATACTATTCAACTGAAACATGTGTGTTATATTGTG TCGAACATAGTTCTTCTGAAAGCTGATTGTAAAGTTGACGTGCACATTACGTTACATTTCTTTC TCATGGTGTGACTTGTGATGTACGTTACATCTTCATGGCTAAAAGAAAATTTCACAAAAGAAAA AGTTTCTCTCTCACATTTCCTTAAACACATAGTTGGCTAACTAAAGAAACAGAGGAACATCAGA TTTTGTGTTCTGTTTAGGTATAATCGATGCTACACTTATTCTGTAATCTCATGATGAATTTAGT TCAAGAGTTCAGTTGTCTAAATACTTCACTGGCACAAGTAGAAGGTCATTTTTCTTGTTGACAG TGAGTCCAGGAGCTTCTTCCATGTCCATATCTTCAACCTTCATGCCTTCTGGTAACTTCCAATC AAAATGATACAAAAGATTCGCAAGACCAAACTCCACCATTGTTGTCCCCATGTACATTGCAGGA CACATTCTCCTGCCGCCTCCAAACGGTAGCAACTCAAAGTTCTGTCCTTTTGTATCAATATTAC TATCAATAAACCTCTCTGGAAGAAACTCCTCGGGATCTTTCCAGGTATTGGGATCACGTCCGAT AGCCCATACATTGACATGAATCTGTGTCTTGGGTTGCATCGTGTAGCCGTTGATCTCAAACTCA GACATTACTTCTCTTGGAAGAAGAAGAGGTGCTGGAGGATGTAGCCTCCATGTTTCTTTAATCA CCGTTTTCAGGTAATGAAGCTGCTCTATGTCTTCGAAGCTGATTAGTTCTCTGTTCTCAAATTT GTTTCGGATTTCAGATTGAACTTTCCTCATCACTAGTGGGTTCTTCGCAAGTTCTGCCATCGTC CATGCCATGGTTCCTGCAGAAGTTTCTATCCCCGCTAGAAGAATGTCCTGTTACAAGAACATTT ACTAAGTTAGAATACAGAACATCTTACCATTGGATTTTGAGTATTTTATTATTAGTTACCATCA AGATTGCTTTAACATTGTTTCTTGTGAAATTGTTATTTCCAACAACAGTTTCTTCTTTCTCCAA TTTCAAAAGCAAGTCCACAAAATCTTCACTTCCTACTTCCTTTTCTTCTTTATGCAAATCAATA ATTTGTTCATAGAACGCATCGAGATCTCACACGCTTTTTTCTCTCCGCCCTTGCAAGCCAGTGA ACCGATCGATGATCCAACCTATGTACGGTATAAAATCTGAGGCAGAGAAACTTCCCAACATTTC GAATGCTTCACGGATTAACTTGTTGAAACTGTCATTGCTAAGCACAGTTCCTTCAAAACTCACA CCAAATGCTATCCTACATACTATACTTACAGTTAAAGCAAGACACTTCTTGTTCAAGTTTATCG GAGTCTTTAAAGAAGCTGATTCCGCGATTGAAACGATAAGTTTCTTGACCTCCTCGTCCTTGAT GTGTTGTGTTGAGTGAATATTTTTAGCACTGAAGAGCTCTTGAGTACAGAGCTTCCTTAGCTCT TTCCAATAATCATTGTAAGGAGAGAAAGATATGTCTCGGTTGTTGTAAGAGAGCTCTCTTCCCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.676270197

Conservation Information
Conserved circRNAs	NA
PMCS	0.676270197

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of 3_circ_igg.2

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