Plant Circular RNA Database

Detail information of Zm00001d022276_circ_g.2

			
						 General Information
					
						CircRNA Name
						Zm00001d022276_circ_g.2
					
						ID in PlantcircBase
						zma_circ_009483
					
						Alias
						Zm07circ00096, GRMZM2G300709_C1
					
						Organism
						
							Zea mays						
					
						Position
						
							chr7: 174246151-174249807  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d022276						
					
						Parent gene annotation
						
							Kinesin-like protein KIN-12C
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d022276_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d022276_T011:4
Zm00001d022276_T001:7
Zm00001d022276_T009:2
Zm00001d022276_T014:4
Zm00001d022276_T013:4
Zm00001d022276_T003:4
Zm00001d022276_T010:4
Zm00001d022276_T008:4
Zm00001d022276_T004:2
Zm00001d022276_T012:4
Zm00001d022276_T005:4
Zm00001d022276_T002:4

General Information
CircRNA Name	Zm00001d022276_circ_g.2
ID in PlantcircBase	zma_circ_009483
Alias	Zm07circ00096, GRMZM2G300709_C1
Organism	Zea mays
Position	chr7: 174246151-174249807 JBrowse»
Reference genome	AGPv4.38
Type	ue-circRNA
Identification method	CIRI2
Parent gene	Zm00001d022276
Parent gene annotation	Kinesin-like protein KIN-12C
Parent gene strand	-
Alternative splicing	Zm00001d022276_circ_g.1
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d022276_T011:4 Zm00001d022276_T001:7 Zm00001d022276_T009:2 Zm00001d022276_T014:4 Zm00001d022276_T013:4 Zm00001d022276_T003:4 Zm00001d022276_T010:4 Zm00001d022276_T008:4 Zm00001d022276_T004:2 Zm00001d022276_T012:4 Zm00001d022276_T005:4 Zm00001d022276_T002:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAGAAAGAAGCTCTGAAGGTTGAACATACATGATTCCGCAAAAGAGATATTTCTGTCAATAAC
ATATCTCTTTCCCCTTGCTTGTAGAAGTTATGAAGCttgatttgtgcaggctttctggtattgt
ataagttcacagcgcagcttatttacttcactgcaataaacatgaatggtaaattgatcagtag
attgtaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTGATTTGTGCAGGCTTTCTGGTATTGTATAAGTTCACAGCGCAGCTTATTTACTTCACTGCAA
TAAACATGAATGGTAAATTGATCAGTAGATTGTAAGGTCCTAGAAACAAGTAGATGTTAGTGTG
TATATATATTTCTTCTCTTGTATTGTATTCTTTTTAGAATTTAGGGTTCTCTCTGTAAACTTAC
CCTATATACATTTGCCCTTTGGGCCCTATGAAATAGACAAGTTGTCATTTGCTTCTCTCCTAAC
ATGGTAGATAGCTAGAGTTTCCCCCAGCCGCCAGCCACCGGCTGCTGCGCCACCGCCGTCGGCC
ACCACCCGACCGTGCACAACACACCTGCCCGCCCTCGTGCGAAGTAGCACGGCCCCTAGCTAGG
GTTGGAGCCTAGACCGTCGGCGCCCCCACCCATCGCCGGAGTCCGGCCAACCGCCGGCACCACG
GAATGAAGCCAGTTGTCGGCGTCCCTACTCCTGATGCCTACCTGCCCCGCCCGCTCGTTGGCCT
CCTAGTAGCAGCGCGCCCAGTTCACGCTCCCACCGCTGCTCGCCAGTCGCCGGCCGTCGCCGCC
AACGTGCCTGCACTCACCGCCCTCCAGTTTCGGCTGTCGCGCCTTGCGCTCTCGATCTCTGGAC
GTCGAGTTCATCGTCGGCGCACCCTCAGCTTCTCCACGCCCCGTCGGCGTTCCCTCGGCGCCTG
CGTTCACTGCGCCACCGCATCGGTGTTCTTTCACCTCAGTCGCACCACCTCTTCGCGTTGCCGT
CTTCCCTGGCCTACACTATCGTCTCCCTCGCCTTGCGTCATCAGCTTCCTCGCCTTGCCCGTCC
TCGCCACACCCGTGCCGACCGTCCTAGCGCCTGCCCGTGAGCGCCACCATCTCTGACTGCTGCC
ACCAGCTGTCACCTGCAGCGCCGTTGCGCGCTTCTGCGTTGCTCGCCGGTCCAACCTGCTTTCC
TGCTCCGCTCAGCACGATCCATCACAACCCACTCAACATGGTTGCTCCTTGTTCCACCTCTCTT
ATGCCATTTCCCTCCGTACCTTTGATGGGACCAACTTTCGTGAGTGGTCAGTGACGAACCCTCC
TGTCCAAGGGGGCGCTGCTACTGTCTTCTGCAGCTACTGCAAGGCGACGACCGACAACACATAC
CATCGAGAAGTGCAGACAATGTCCTCCTCGTCGCCAACCTCTAATATGTGTTTTGACGTTTAAA
CATAGTTCAAACGTCGTTTAAATGTAGTTTTAATAACACTGCCAGTCCTCCACTAACGCTGCCG
TAGCTTTTGCCGCCCCCACTTCATTTAGCTTTGCTCAGTGGCACCATCGTCTCGGTCACATGGC
ACCATCGTCTCGGTCACATGTGTGGGTCTCGTTTGTCATCACTTGTTCCTAGTGGTGTTCTTGG
GACGGTTTCTGGTGATACCTCCCTGGTTTTAAGCTTGGCAAGCAACTACAGTAGCCCTATCCTA
GTAGTCAGACTGCAGACTCAACCTTTTGATCTTGTTCACTCTAATGTATGGGGCATTGCTCCCT
TCGTTTCGAAAGAGGGACATCGCTATTATGTGATTTCATTGATGATTTTTCTCGTTTCGCATAA
GTTATTTTTTGGATTCACGAGCTCAAGTTCCCACTGCCTATCAGAATTTTGCTATTATGGTCAC
ACCCAATTTGATTCTCACATTCATGTGTCACGGGCCGACTCTGCAGGCGAGTATTTGTCTCGCG
CTCTCCGTCAATCTCTCGCTAAGCAAGGCACCCTTCCTCAACATTCTTGTACCGGTGCTCACGC
TCACAATGCTGTTGTTGAGTGTAGGCACCATCATCTTCTTGAAACTGCTCTTGCATCACTCCTG
ACATCCTTTGTTTCTCTTCATTTTTGGGCTGAAGTTGTGTCTACAACTGTTTACCTTGTGAACA
TTCAACCCTCTATTGCTCTACATGGTGCCACTCCTCTTGAGCAACTCTTTGCTCGACCATCGCA
GTACAGTCATCTTCATGCTTTTGGTTGTGTTGCCTTTGTCCTTCTCCAATCTCGTGAAAGGACC
AAGCTCATTGGACAATCTGTTTAGTGTGTCTTCCTTGGATATGACTCTGAGCGTAAGGGATATC
GTTGTTGGGACTTTGTCACTCGTCGCATTCGAGTGTCTCGGGACGTCACCTTTGATGAGTCTCG
TCCCTTCTTTACTATGGATTTGTCCTCTTCTTCCTCTCCCACTGAGTCTGTTGATTTCCTCAGT
TTGGTTCCGCCTCTTCCTATCACCTTGTCCCTGCTATCTATTCCTCCTTCATCACCATCACCTC
CACCTCCCTCTCCTCCACCACCACCCCCTCCTCTACCTCCCTCTCCTCTACCATCATCGCCTCC
TCTACCTCCGCTAACTCCACCTCCTCTATCATTGACCGTCGTCTCTTCAGCTCTATGCTTATTC
TGATGTGATTTGGGGTACCGATCCTTCGGATTTCAAATCCATCTCTGTCTATTGTGTCTTTCTT
GGGTCCTCCTTGGTTTTTATGGAAGACCAAGAAGCAGACTGTTGTTGCTCATTCCAGTGTTGAT
GTTGAGTTGTGTACTTTGGCCAGTATGACGGCTGAGGTAACATGGCTTTGGTGGTTGTTGGCTG
ACTTTGAGATTTCTCTCACTACCTCCACGTCTATGCACTGTGATCATACCGGTGCCATTATTAT
TGCTTTGGATCCAATGAAGCATCGACTCACTAAACGCATTAGCATCGACTGTTTCTATGTTCGA
TATGCAGTTTAGGATCATGTGATTTCCCTTCAGTATGTGCCTTCAGAGTTGCAGCTTGCTGATT
TGCTTGCAAGGCTCATACTAGAGCTCAACATAGTTTTATTCTCTCCAAACTCAGTGTTGTTGAC
CCGACATGAGTTTGAGACGGGTGTTAGTGTGTATATATAGTTCCGTTCTTGTATTGTATTTTCT
CTAGAATTTAGGGTTCTCTATGTAAACTTACCCAATGTACATTTACCCTTTGGGTCCTATGGAA
TAGACAAATTGTCATTTGCTTCTCTCCTAACAGATGTAAGGTGTGTAACAGTTAACATGAGCAG
TATATTGTGATAATCAGGAAGTCTATATGAATATACATTGAGAATTTAAGATGTAATACGGTTG
TAAAATACTTACCGAGCTAATAGAACATTGTTTTCTAAGCACGCATCCAATTCCTTCCTGCAAC
TGTCAAGCTCCTTGATGAGCTCATCACCCTAAAATCATTGCAACTCACAATTAGAAAGTAAAGT
AGTAAACTAAGGTCGTTCTTTGTTATATGCGAACTAGCTTCGCCTCCAAATTATCCCACTTCTC
CTTATGGGTTATGATACGATATTTCTTGATAAAATTTAGGCTAATCTTTTGGCTTCCTTTAAAA
CAAAGAACAGGGACCACACCGATGTGCATACATAATGAACCAAAACCAATGAGAACACACCTGA
GGTTCTACTTCTTTACGAGTTGTTGTGTATTTCTGCTCAAGAATATGGAGGAACTACAAATGCA
AAATTATTAGAACAGCATGCAAGATTAAAAAGATTCAGCAGAAAGAAGCTCTGAAGGTTGAACA
TACATGATTCCGCAAAAGAGATATTTCTGTCAATAACATATCTCTTTCCCCTTGCTTGTAGAAG
TTATGAAGC
						
					

			
		

Sequences
Splice junction sequence	GCAGAAAGAAGCTCTGAAGGTTGAACATACATGATTCCGCAAAAGAGATATTTCTGTCAATAAC ATATCTCTTTCCCCTTGCTTGTAGAAGTTATGAAGCttgatttgtgcaggctttctggtattgt ataagttcacagcgcagcttatttacttcactgcaataaacatgaatggtaaattgatcagtag attgtaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGATTTGTGCAGGCTTTCTGGTATTGTATAAGTTCACAGCGCAGCTTATTTACTTCACTGCAA TAAACATGAATGGTAAATTGATCAGTAGATTGTAAGGTCCTAGAAACAAGTAGATGTTAGTGTG TATATATATTTCTTCTCTTGTATTGTATTCTTTTTAGAATTTAGGGTTCTCTCTGTAAACTTAC CCTATATACATTTGCCCTTTGGGCCCTATGAAATAGACAAGTTGTCATTTGCTTCTCTCCTAAC ATGGTAGATAGCTAGAGTTTCCCCCAGCCGCCAGCCACCGGCTGCTGCGCCACCGCCGTCGGCC ACCACCCGACCGTGCACAACACACCTGCCCGCCCTCGTGCGAAGTAGCACGGCCCCTAGCTAGG GTTGGAGCCTAGACCGTCGGCGCCCCCACCCATCGCCGGAGTCCGGCCAACCGCCGGCACCACG GAATGAAGCCAGTTGTCGGCGTCCCTACTCCTGATGCCTACCTGCCCCGCCCGCTCGTTGGCCT CCTAGTAGCAGCGCGCCCAGTTCACGCTCCCACCGCTGCTCGCCAGTCGCCGGCCGTCGCCGCC AACGTGCCTGCACTCACCGCCCTCCAGTTTCGGCTGTCGCGCCTTGCGCTCTCGATCTCTGGAC GTCGAGTTCATCGTCGGCGCACCCTCAGCTTCTCCACGCCCCGTCGGCGTTCCCTCGGCGCCTG CGTTCACTGCGCCACCGCATCGGTGTTCTTTCACCTCAGTCGCACCACCTCTTCGCGTTGCCGT CTTCCCTGGCCTACACTATCGTCTCCCTCGCCTTGCGTCATCAGCTTCCTCGCCTTGCCCGTCC TCGCCACACCCGTGCCGACCGTCCTAGCGCCTGCCCGTGAGCGCCACCATCTCTGACTGCTGCC ACCAGCTGTCACCTGCAGCGCCGTTGCGCGCTTCTGCGTTGCTCGCCGGTCCAACCTGCTTTCC TGCTCCGCTCAGCACGATCCATCACAACCCACTCAACATGGTTGCTCCTTGTTCCACCTCTCTT ATGCCATTTCCCTCCGTACCTTTGATGGGACCAACTTTCGTGAGTGGTCAGTGACGAACCCTCC TGTCCAAGGGGGCGCTGCTACTGTCTTCTGCAGCTACTGCAAGGCGACGACCGACAACACATAC CATCGAGAAGTGCAGACAATGTCCTCCTCGTCGCCAACCTCTAATATGTGTTTTGACGTTTAAA CATAGTTCAAACGTCGTTTAAATGTAGTTTTAATAACACTGCCAGTCCTCCACTAACGCTGCCG TAGCTTTTGCCGCCCCCACTTCATTTAGCTTTGCTCAGTGGCACCATCGTCTCGGTCACATGGC ACCATCGTCTCGGTCACATGTGTGGGTCTCGTTTGTCATCACTTGTTCCTAGTGGTGTTCTTGG GACGGTTTCTGGTGATACCTCCCTGGTTTTAAGCTTGGCAAGCAACTACAGTAGCCCTATCCTA GTAGTCAGACTGCAGACTCAACCTTTTGATCTTGTTCACTCTAATGTATGGGGCATTGCTCCCT TCGTTTCGAAAGAGGGACATCGCTATTATGTGATTTCATTGATGATTTTTCTCGTTTCGCATAA GTTATTTTTTGGATTCACGAGCTCAAGTTCCCACTGCCTATCAGAATTTTGCTATTATGGTCAC ACCCAATTTGATTCTCACATTCATGTGTCACGGGCCGACTCTGCAGGCGAGTATTTGTCTCGCG CTCTCCGTCAATCTCTCGCTAAGCAAGGCACCCTTCCTCAACATTCTTGTACCGGTGCTCACGC TCACAATGCTGTTGTTGAGTGTAGGCACCATCATCTTCTTGAAACTGCTCTTGCATCACTCCTG ACATCCTTTGTTTCTCTTCATTTTTGGGCTGAAGTTGTGTCTACAACTGTTTACCTTGTGAACA TTCAACCCTCTATTGCTCTACATGGTGCCACTCCTCTTGAGCAACTCTTTGCTCGACCATCGCA GTACAGTCATCTTCATGCTTTTGGTTGTGTTGCCTTTGTCCTTCTCCAATCTCGTGAAAGGACC AAGCTCATTGGACAATCTGTTTAGTGTGTCTTCCTTGGATATGACTCTGAGCGTAAGGGATATC GTTGTTGGGACTTTGTCACTCGTCGCATTCGAGTGTCTCGGGACGTCACCTTTGATGAGTCTCG TCCCTTCTTTACTATGGATTTGTCCTCTTCTTCCTCTCCCACTGAGTCTGTTGATTTCCTCAGT TTGGTTCCGCCTCTTCCTATCACCTTGTCCCTGCTATCTATTCCTCCTTCATCACCATCACCTC CACCTCCCTCTCCTCCACCACCACCCCCTCCTCTACCTCCCTCTCCTCTACCATCATCGCCTCC TCTACCTCCGCTAACTCCACCTCCTCTATCATTGACCGTCGTCTCTTCAGCTCTATGCTTATTC TGATGTGATTTGGGGTACCGATCCTTCGGATTTCAAATCCATCTCTGTCTATTGTGTCTTTCTT GGGTCCTCCTTGGTTTTTATGGAAGACCAAGAAGCAGACTGTTGTTGCTCATTCCAGTGTTGAT GTTGAGTTGTGTACTTTGGCCAGTATGACGGCTGAGGTAACATGGCTTTGGTGGTTGTTGGCTG ACTTTGAGATTTCTCTCACTACCTCCACGTCTATGCACTGTGATCATACCGGTGCCATTATTAT TGCTTTGGATCCAATGAAGCATCGACTCACTAAACGCATTAGCATCGACTGTTTCTATGTTCGA TATGCAGTTTAGGATCATGTGATTTCCCTTCAGTATGTGCCTTCAGAGTTGCAGCTTGCTGATT TGCTTGCAAGGCTCATACTAGAGCTCAACATAGTTTTATTCTCTCCAAACTCAGTGTTGTTGAC CCGACATGAGTTTGAGACGGGTGTTAGTGTGTATATATAGTTCCGTTCTTGTATTGTATTTTCT CTAGAATTTAGGGTTCTCTATGTAAACTTACCCAATGTACATTTACCCTTTGGGTCCTATGGAA TAGACAAATTGTCATTTGCTTCTCTCCTAACAGATGTAAGGTGTGTAACAGTTAACATGAGCAG TATATTGTGATAATCAGGAAGTCTATATGAATATACATTGAGAATTTAAGATGTAATACGGTTG TAAAATACTTACCGAGCTAATAGAACATTGTTTTCTAAGCACGCATCCAATTCCTTCCTGCAAC TGTCAAGCTCCTTGATGAGCTCATCACCCTAAAATCATTGCAACTCACAATTAGAAAGTAAAGT AGTAAACTAAGGTCGTTCTTTGTTATATGCGAACTAGCTTCGCCTCCAAATTATCCCACTTCTC CTTATGGGTTATGATACGATATTTCTTGATAAAATTTAGGCTAATCTTTTGGCTTCCTTTAAAA CAAAGAACAGGGACCACACCGATGTGCATACATAATGAACCAAAACCAATGAGAACACACCTGA GGTTCTACTTCTTTACGAGTTGTTGTGTATTTCTGCTCAAGAATATGGAGGAACTACAAATGCA AAATTATTAGAACAGCATGCAAGATTAAAAAGATTCAGCAGAAAGAAGCTCTGAAGGTTGAACA TACATGATTCCGCAAAAGAGATATTTCTGTCAATAACATATCTCTTTCCCCTTGCTTGTAGAAG TTATGAAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.098173633

Conservation Information
Conserved circRNAs	NA
PMCS	0.098173633

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							174249775-174249801(-)
						
						Potential amino acid sequence
						
							MLLTEISLLRNHFLHILEQKYTTTRKEVEPQGDELIKELDSCRKELDACLENNVLLARYGGKWH
KRGGTRSNHVEWVVMDRAERSRKAVNAGAEGTPTGRGEAEGAPTMNSTSRDRERKARQPKLEGG
PKGQMYIGEVNKLRCELIQYQKACTNQAS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	174249775-174249801(-)
Potential amino acid sequence	MLLTEISLLRNHFLHILEQKYTTTRKEVEPQGDELIKELDSCRKELDACLENNVLLARYGGKWH KRGGTRSNHVEWVVMDRAERSRKAVNAGAEGTPTGRGEAEGAPTMNSTSRDRERKARQPKLEGG PKGQMYIGEVNKLRCELIQYQKACTNQAS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020;Zhang et al., 2019

circRNA

Detail information of Zm00001d022276_circ_g.2

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