Detail information of Os05g0440250_circ_ag.1


General Information
CircRNA Name Os05g0440250_circ_ag.1
ID in PlantcircBase osa_circ_028034
Alias Os_ciR221
Organism Oryza sativa
Position chr5: 21563165-21567931  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 203/7
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTATTTGACCATTGCTGTGTTGATCAGCCATGCCCCTCATTATTTGTCCAATTTTCCTATAACC
ATCCATGGTTAAGCACTGTCTTCCATTAGGATCAAAcgtactagaatcttggccaacaacaaaa
accaaaagctcaggacgaaacttctctatggctggaacaactaattcattcatcgcatactcat
accctgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTACTAGAATCTTGGCCAACAACAAAAACCAAAAGCTCAGGACGAAACTTCTCTATGGCTGGA
ACAACTAATTCATTCATCGCATACTCATACCCTGCATCCCCACTGCCATTAGGCAAAGGAATAT
TGAGATTGTACCCAAGACCCCTGCCTTCACCAATCTCATCCACCGAGCCACTCTGGGGATGTGA
TGGACCCCATGAACCATGCTTCATGTGAAGAGAGATCGTCAGCACGCTGTCTGTGTGGTAGAAG
CCCTCCGCAGTGCCATTTCCATAGTGCACGTCAATATCAACAACAGCAACCTTTCTGCGTCCTG
AATCCAGAGCCAGCTTCACTGCAAGCCCAGCATTGTTCAGGAAGCAGTAACCATCAGCACGGTC
CGGTTGCGCATGATGGCCAGGGGGGCGGACCAACGCATAGGCAATCTTGGCATGTCCATCTAGT
ATGTGCTTCATCGCTGATAAAGTTGTTCCAGCCGCCAGAAGCGCAGCACCCCAGGATCCAGGGT
TCAAGAAAGTGCCTTCACACAGCTTCTTGGCACCAACGGCATTTGCTTGCACGAGCTCCTCTAT
GTATTCTGTCAACCATAACAAGATTTATACAAACTATTAAGTACACTAATCTTCTGCGATTCCA
TATGCAAATGAGGATGTAACAATCGCCGTAACAGATAATAAAAATCGAGAATGCTAACTATGGG
CCAAGTCAATTAGAGTTTTTTTTCCCCAAGATTTGAGATAGCGAGATTTGGGGCTAACCGGCGG
AGTGGAAGGAGAGGAGCTCGGCGGCGTGGGCGGGGCGGCCGGAGTGCCAGGAGATGAAGCGCGC
GATGGGGCCGCGGCGGAGGATGGAGACCATGTTGCGGACGCGGTCGGCGTTCTCCGGGTGCTGG
TCGAGCACGTCGAGGAAGCCCGGGTCGCGGCCCGAGTCGAACACGCCGCGGCCGGCGTCGTGGG
CCACCATGCCCTCGTGCCAGAACACCGCCAGCTGCTCCCCCGTCGCCGGCGCCCCCTCCGCCGC
CACCGCGGCCGAGGAGGAGGCGGACGACTCCATCGGCGACGCCGCGACGGTGACGTTTCCTTTG
CCGCTTCGTGTTGGTCGATTGGTCGAAGTCTTGACTCTTGACCGAGAGTCTTCTTCCTCCGGGG
CTACGTGAGTTCGTGCAGGCTCGCAGCGCTGGAAATTAACAAGATATGCGTGGGCCGTATAAGA
TCGAAATTCTGGTGGGCCTCATTGTCTGATGGAGAACCTAGTAAAGTGGGCCGAGTATTGGAGG
ACCAGCGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCAGCGAGATACGAAATCATCATCGAA
CCGCAAAACCAAATATACGGGGTTACTTAACTATACAAAACCGGTCACCCGATAACACTCGACG
GTTTTGAGTCAGCGTGGCGGCTGAGTCAGCGTGGGACCCACGTGAGCCCACATATCAGGGTGCC
ACCTCATCTCTTCCCTCTTATTTCCCCTCTTCTCCCTTTCTCTCTCTCACTTTTCTGAGCCGGC
GACGGGCGGCGCTGTGGGGAGGAGGTCCGGCAGCCGGCGTCGCGCCGGCGGAGGCAACGCCGCC
GTCAGCATCCTCGTTGCCGTCGCCATGGCACAGCGCCGCTTGGCGGCCGCAGGAGGGAGCAAGG
TAGTGTCAGCGGCGACGACTGAAAGGGACGAGGCAGGGGGAGCGATGCAGCCGCCGCGAGAACC
CCGTCGAGGCCAGCGGCGCCCCACGGCCTACTCCTGCTTCGTCGTTGCCTCCGCCCCTAGTCGC
GGCACCCACGCTTCCCCGACCACGATGCCGCCGCCTCCGCCATGGCGTCCGCGAAGGCCCCCGC
GCCGCAAGAGCAGAAAGTGGAGGGCGAGTCGTCGGACGCGTCGTTAGCGGCGGGGGGCGGCTTT
GAGCTCCCGCCCGCGTGCAGCTGCCACTCGGCGGCAATCGGCGTGGTCGACCGTCATGGTCTCC
TCCTCCTCCTCTGCGGCGGCGGCGCGGGGGGGGGGGGGGGGGGAGGGGAGGGGGGAGGGGGCGG
CTTCGAGCTCCCGCCCGCGTGCGGATTCCACTCGGCGGCAACCGGCGCGGCCGACCGCCGTGGT
CTTTTCCTCCTTCTCCACTTGGCGGCCGTCGTGGCATCCACGGTCGTCGTCATCGCCGCGGCGA
GCGGCGCCGGCAAGCTGTCGCTGTGGGCGCTGGTGAAAGTGGTGGCGCCGCTCCCTCCTCTCCC
GCCGACGCCGCCGCGCGCTGCTCCTTCCTCTTCTGCTGGCGGACTTGGTGCGGCCGCCGCGTCG
CCATCTTTCTCCCCCCGCCTTGCTCCTCCCGCCGCCGCCTTGCTCCCCCCGTCGTCAGCTGAGA
AAAGTGAGAGAGAGAGAGAAAGGGAGAAGAGGGGAAATAAGAGGGAAGAGATGAGGTGGCACCA
TGACATGTGGATCCCACGCTGACTCAGCCGCCACGTAGGATAAAACCGGTGTCAAAACCGTCGA
GGGATCTCGGGTGACCGGTTTTATATAGTTAAGGGACCCCGTATATCTGGTTTTGTGCTTCGAG
GATGATTTTGTATCTCGCTGACAAATTGAGGGACCTTCGGTGTACTTTTTCCAAGGACCAGCTG
CACCAGGATGATTTTGTATCTCGCTGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCGAGGAC
CAGCTGCACCATGTTGTATTTTTGTAGTTACTATAACCCGTACGTTGCAATGGCTAAAATCATT
TTTATCGCTATACATTTTTCAGTCCCAACCCACCTCGTTGTCTTCCTCTACGTGGCCTGCCTCT
CTTTAACCTAGCCCACAAGTGGAGTTGTAGGCTCAGCTTGTATGGTCGACTACCGTCCTTAACC
TCCGGAAGACAGTTCCGTGTCCGTACGATGCTAGAACTAATCATTCTTATCAAATCCGGTCGAA
TCTTTCTTGATCTTCTAAAATTGGTTGAGGGTTTTTGATACACTCGATCTTCTGTTTCCGTTTT
TATCAAATTGAAATGAATATGCAAAACTCCGGGATAAAAACAGTGACTTTTAAATGGTGATTAA
ATCCAATAAATTAAAGTGAAATTAAAAGGAAAATTCATGTGGGGGAAATGATAGGGAGTAGCGG
GAAATCGATTTTTACAATTAATTGGAAGAGGGAACATATGGGGAGGCAGATCTACGTAGCGACG
ACGTTAGGGTTTGGTCCGGTGACTAAAAAACTGAGTATGTAAAAAACAATCCTTACCAGCCCGG
TGACGAAAAAACTGGGCAGATAAAAAAATAAATCCTTATCGTGTACACGTACTCTTTCACGTGT
AAAAGAGCGCGACATAAAAAACGAAAAAAATGGATGAAAAAGAAAAAAAGGCGACGAAAAAAAT
AAATAACAGAAAAAAAAGATGGATGAAAAAAAGGGCGAAAAGAAAAAGGACGAAAAAAACAAAA
GAGAAAGACGGGAGGGAAAAAAGGGCGAAAAAAACGGACGGGAAAAAAGGAAAAAAGGGAAAAC
GGTGAAAAAAAAGGAAAATCGCGAAAAAAGGAAAACGGATGAAAAAACACCGGAAACCTTGCGT
ATTTTTATATTAGATATAGATATATTGTTGTTCGCTGTACCAAAGTCTATATGTTTTTTCTTTA
ATAGTACTTCCTCTTTTCATATTACTATAATATTATAATATTATAGGTTTTGAATAGATTTATG
TCAAGATTTATGCATTTTTTTAATATAAGTACCTAAAATTATGTGGATATTAATGAATCTAGAC
GATTGATGAAATACCAAAACATTTTTAAATGTGGAAGATGGAGTATTTATACTTATTCAGCTCA
ACAACTAAGCTCCACATATACAAGCATAATCTAGAATGCGTCACATTTTGTACTAGGTTGGTTT
ATTTTGATAGGCATGAAGTATACTACTCCCTCCGTCCCCTAATATATAGGATTTTGACATTTTG
CTTGCACTGTTTAACCATTCGTCTTGTTAAAAAAAATTTGAAATTATTATTTTTTTGACTTACT
TTATTATCCAAAGTACTTTAAAGCACAACTTTTCTTTTTTTTATATTTGCACAAATTTTTTGAA
TAAAAAGAGTTGTCAAACAGTGCAAGCGAAATTTCAAAAACATTTATATTAGAGGACGGAGGGA
TTAGTAAACAATGGTGAAATCTGCCATGGCCTCCACTACCGGATATGGGATTATATATAGGAGC
TTCTGCTATATAGTAAAGGGGTTGAAGTTTTGTCTAGTTTGTTTAACCCCTGTTATTTCTTACT
GGTTCTGCAAGTAAACAATGGTACAACTACATGATACATACAATACCAGTGAGAATTGAAAATT
TGGAGGTCGTTCATGAGAGGGGCAAGCATTCGGATGCTTCTCCAGTACATATGTACTTTAAGGC
GAAAGACCATGAGCCTAGACTCTTGATATGAAATTGAGGCTTGGATTTCTATATATCCTTCAAG
AACGGAATAGATTCTTTCCAGCATTTCTTGATGATGTCCACGGCTTGCATGGTGTATTTTTCAT
CATCTGGATAAAAACCCAATGGGTCATCAAGCAATGGGGCCTGCAGATTCAAAACACCTTCCAG
CGTTGCATGCAGACAATATGCCGAATAGGTGATGTGATAACCTCCTTCCTGGACAATCAGTATT
TGACCATTGCTGTGTTGATCAGCCATGCCCCTCATTATTTGTCCAATTTTCCTATAACCATCCA
TGGTTAAGCACTGTCTTCCATTAGGATCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.817341554
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017