Plant Circular RNA Database

Detail information of Solyc06g009220.2_circ_g.2

			
						 General Information
					
						CircRNA Name
						Solyc06g009220.2_circ_g.2
					
						ID in PlantcircBase
						sly_circ_001881
					
						Alias
						6:3157446|3162413
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr6: 3157446-3162413  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Solyc06g009220.2						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Solyc06g009220.2_circ_g.1 Solyc06g009220.2_circ_g.3 Solyc06g009220.2_circ_g.4 Solyc06g009220.2_circ_g.5 Solyc06g009220.2_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						fruit
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc06g009220.2.1:5

General Information
CircRNA Name	Solyc06g009220.2_circ_g.2
ID in PlantcircBase	sly_circ_001881
Alias	6:3157446\|3162413
Organism	Solanum lycopersicum
Position	chr6: 3157446-3162413 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	CIRI
Parent gene	Solyc06g009220.2
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	Solyc06g009220.2_circ_g.1 Solyc06g009220.2_circ_g.3 Solyc06g009220.2_circ_g.4 Solyc06g009220.2_circ_g.5 Solyc06g009220.2_circ_g.6
Support reads	2
Tissues	fruit
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc06g009220.2.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTGATGAACTG
GAATTACAAAGGCGACCTAATCCGAGAGATCACATGgaagaagctcctcaaatgctggacactt
taccttcattcgaagtttcccctggtctgactcatccactaggagtatcagaaattgaaagtgg
aataaatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 684
Transcript exons: 3157446-3157603,3159038-3159116,3160960-3161196,3161905-
3162009,3162309-3162413
GAAGAAGCTCCTCAAATGCTGGACACTTTACCTTCATTCGAAGTTTCCCCTGGTCTGACTCATC
CACTAGGAGTATCAGAAATTGAAAGTGGAATAAATTTTGCAATTTTTTCGCAGCATGCTTCTGC
AGTTACACTTTGCATAATTCTTCCAAAGAGTGTTCATGATGGAATGATTGAATTAGCATTGGAT
CCACAGAAGAACCGCACCGGAGACATATGGCACATATGCATTAAGGAGTTGCCCCGAGGTGGGG
TCCTTTATGGTTATCGCATTGATGGACCTCGAAATTGGCATGAAGGGCATCGATTTGACGATAG
CATTATTTTGATTGATCCTTACGCAAAACTAATTGAAGGTCGACGAGCTTTTGGAGATGAAAGC
AATAAAATGTGTAGATTTTTTGGAACTTATGATTTCAATAGCTTGCCTTTTGACTGGGGAGAAA
ATTACAAGCTTCCAAATGTACCGGAGAAAGATCTTGTTATATATGAGATGAATGTTCGTGCTTT
TACTGCTGATGAAACAAGTAGTTTGGATCAAGATCAACGGGGAAGTTACCTTGGCTTAATTGAA
AAGATACCACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTG
ATGAACTGGAATTACAAAGGCGACCTAATCCGAGAGATCACATG
						
					

						Genomic sequence
						
							GAAGAAGCTCCTCAAATGCTGGACACTTTACCTTCATTCGAAGTTTCCCCTGGTCTGACTCATC
CACTAGGAGTATCAGAAATTGAAAGTGGAATAAATTTTGCAATTTTTTCGCAGCATGCTTCTGC
AGTTACACTTTGCATAATTCTTCCAAAGAGGTTAGACTCACGCTTTTGGATGGTATATTTTGTT
GTCTTTAATTCTGGTCTTAGTTGCAAATTCTAGATATTAAATTCTACTACTGTTAATCCTGCCT
ATTAAATTTGTTAATGTTGAGATATTATTTGATTTGCAAAATCAGAGTGATTTGATATTACTAG
GATTGGTTTTGTAAATATACACCAACCAAAAATGTATACAAGGTGTAATAGTAGTAATCCCATC
CAAGCTTAAGGGAACAATCAAGCTTTCCGTTTCTTCTCATTCTTTTCCCAATGTTCAATGGTAT
TAGACTCAGAGGAATTCTCATATGATCTTTCCTTTCCTTCTTATCCTCCAAATCCTCTGGATGG
AAAAGATAAACTTCCGTTCTGCCCAATTTAATCTGGAGGTGTAGGAGTAAGTTGAGCGTCACCT
CCTATACAAGAAGTGTGACAGGGCTCGAGTGACCTTAGACCGTGAAGCTCATCACCAACAGCTT
TCTTGTCCCCGTCAATGCATCGATTTGCCTCACCAGAGCTTAATCCATGTGCAGATGCGGGAGA
CAGAATTCTGGCATCTCTTCTGACTGAGCTCACCTGACAGCGAGCCATATCCAGTGGTCTCCTT
TTCCGATTCATCACTTGTGACTCCAAATCACCTCAAGGATCTCTGGGAAATACCCGAGGGTCTT
TCCGAAGCAACCTCTCTACCTCCACAAGGTAGTGGTAAAGTCTGGATACATTCTACTCTCTTTA
GACCTTCACTTGTGGAATTTCAGTGGGTATGTTGTTGTAATATGAATAATTCTAACCTAACATA
GATTGGATTATGGAAAGCCAGTGGGTTAGGTTGTTTTCCATGCATACTGGGAGATAAATAGGAG
AGGTTGAAGAGAGGGGTATGGGATGCCTTACATTATCTATTCCAATATATTTGAAACGGGAAGG
ACAACATATGCCCTTCTTAATTCCCCCCCTGTAATTATATCAACAAGGAGGTGGGTGGGATGCC
AAATGTAAGTAAAAGCTTTCTGAACAGCATAGGAACGTTTCATCTTAAATTCAACTTGTAGGTA
TCGTCACATCCCTTCATCTATTGCAACATTTCATCTAAGATGGAGAAAATCTAGAAACTATGTT
AATGAAATGGTGTTAAACATTCTGGTGAACCCAGCATAACCTTTTCTGCAGTAATTGACGTTGT
ATCACCTTGAGATACCATTATAAATTTAGTATGTAGTAAATGTTCAAAAGATTTGTTACACTTA
GGATGAAGTACCATATATTTACAAAGACTTTGGAGTATTGAACAGTTTAAAACTACCTGTTCAT
TCTTCTTGCCAGGGAATAGTACTATCCCTGGTGAGCTCATGCTCATTTTTCTCATATATCATAT
GCACATCTGCGTAAAGCATGTTGAGTGAATATATGTTACATGGGAATGCTTGACAGTGTTCATG
ATGGAATGATTGAATTAGCATTGGATCCACAGAAGAACCGCACCGGAGACATATGGCACATATG
CATTAAGGTAGTAATTTAACTATTTTATGTACCTTCATTACTGTATTCACTCAGCAATCTTCAA
AGATTATATGATTTGGATGCTCATCGTATCATGTTGGCTGTCCACTTTCTACTCTCTTTTTGCT
ATTAATTGACCTGCTCCCTATTGTAGGCAGTGTCAAATGATTGATCTCCTTCCTTAATGAATAC
TCAAATGTGTCCATAGTTTCAATATAAAGTAAACATATTGTGGTTTTCTGTTACATTTTTAAAA
GAGAAGTTAACATATTGTAGTTAGAACTGAATGTCATCCAATTGTATGTCCAATGATTATTTGA
ATTTAATTTATCTTTCCTGTTATTCTGTCGAATAAAAACATTTCAAATCCTTTCTGTAGAGTCA
TTGAGTTGTCCTAGTAAGTCAAATGACCTCACATATTTGGTAGGGTATCTAGCAATTCTTTGAC
CTTGACCTCACATGTTTCCAACTTTTATTGAGAATATCCCAACTAAGTAAAACACATAAACTAA
TGAAACTTTCTTTCCTTAAATTTCCATGCTGGAGCTGGAAGGAAGTAGTTCACTTCAGATAGAT
GCATGGAATATGGATCTTGCTAATCTGAAAGGATTAAATAAAGGGATAAATTAAGATGAAAGAG
AAGTAATGTAAATGTTGATTGTGTTAATTAATATGATTTTAGGAGACTTTATTTTTCCTTTCCT
AGCATTATTGTAGGAACAAAATATTTTTTTTTTATTGTAAATTGATTGTCTTTCCTTAGTAAGG
GTCCATTGCAAACTACCCCTTCTCTTTAAGAACCCTAATTGATTGTAGTAGACCTAGTTAGCAT
ATTAGGGATGATCATGTTTAAGCATATTAGGGATGATCATGTGTACTAGCAGATTCAATTCAAG
AACTTGGATGATTGCGATCTAGACCCCTAATTGAATAATTAAAGACAATAATAATACAAGACTA
GTTACATTCTCCACTTAATCGAATAAGAACCATATATATCAAGCAAAGAGTTTAATATTACCTC
TTAAAAAATCGTTCTTGTAAGGTTGTACAAGAAATCCTAAGTAACCAATACACGAAGATATGAA
TAAATAAAATCTCAATTTTATTGATAGCTATTCTGTGTCAAAAAGAATGAAATCAACGTGGGTG
AATCTAGGGTAAATTTCTAAAACACTATCCCAAATAGCACGAGATTCAATATCTACTTTATGGA
AATAATAGATAATAAAACCTAACTAGGAAACTTTAAACTAGGAAAATTGAACTAGACAATTTTT
AAACCAGGAAAACATGGAAGATTAATGTCACACTAATTCTAGAACTACCTAACAAAATAAGGAA
AGAAGTGTCCAATTTTCTCCTGAAAATACGCCTATTCCAACAGACTTGTGCATGTATTTCAGCC
TCTTTTGGGGATCCATACATGCTATTAGGTTGGCTATATGAATCTTCACTGACCATATTTCCTC
ATTTATGTTTAAGCTCATGTTAATCATATACTAAAATAAATAAAAGTGAAAATAAGTCAAATTT
CATTCCAATTACTTCCTTTGTATTTATTTGTTCAGATTGGACTTCTAACTCGTTCAAATGCATA
ATTATCTTTAAGTTTAACATTCACTAGTATCAATTTTGTAATCACAAATTTCCTTGGATGAATC
AATAGTTTCCCATATTTTTGTACTGTTGGAACTGTGTAATGAAGGTATACATTTCTCTTTTCAG
CAGGCCTTTCCGTGGTTTCTATTTTACTCACAGTTTATGCTGCTATGTCACTATTATATGCTAT
TATTGTGCTTGCTATATAACCTTTTCTTACTGTATTATTTTTTCTCCGTCATCCGCAGGAGTTG
CCCCGAGGTGGGGTCCTTTATGGTTATCGCATTGATGGACCTCGAAATTGGCATGAAGGGCATC
GATTTGACGATAGCATTATTTTGATTGATCCTTACGCAAAACTAATTGAAGGTCGACGAGCTTT
TGGAGATGAAAGCAATAAAATGTGTAGATTTTTTGGAACTTATGATTTCAATAGCTTGCCTTTT
GACTGGGGAGAAAATTACAAGCTTCCAAATGTACCGGAGGTAGATTGAGAAGAACTACTTGAAT
AACTTTTTTCCTCGTGTGCAAATCTAAAGATAATTTGCTTGCATGTTCAGCTATTTGACTTATG
AGCTATGACTAGTGACAGAGCTGTCATTTTGTAAGTGCTCAAATTGTCTGCCATTTAGTTGATC
TTGTTATTTCAAGTAAGAGGAGTTTCAGCTTAATCTTCTGTAGTAATATTATTGGTTCTTTGGT
AGATTGAGCTGTAAGATTATAGTACTTAGATCTTTTATAACATTTTACTCTTAAGGATAGTTCG
ATTTGCATTTTACTTATGAGTGGATTATAATGTAGGGACTGCTTGTGTGGTGATTAATATGTAA
CAGATTGCTATGCAGTCATTAACGATCAAGGAATTGTTGTGTAGTGATTAAGAGATTATTGCCA
TACAAGAATAACCTTTTTTTAGTGACATTCTTGTCTTTGAATAGTCTAATCTCTGTATGGCTAA
TACACGTATTCTTGTTTCACATTGTATCTAGTATATAATATCACATAGATTCTCGTATAACTGA
AGTTGTATTATTTGGATACCACCAACCAAATGTTGCATTACATAATGCGCGATTGTGCAACCAA
CCAAATGTTGTGTTATTCTATGCCCGAATATTTGCTGGATTTGTTACCACACAATCAACCAAAC
CAACCATTAACTCCTTGCAGTATATCCTCTTTTCTTTGGGCAGAAAGATCTTGTTATATATGAG
ATGAATGTTCGTGCTTTTACTGCTGATGAAACAAGTAGTTTGGATCAAGATCAACGGGGAAGTT
ACCTTGGCTTAATTGAAAAGGTACTTCCATATTCTACTTGTCTATTTTCTCTTTTACCAACTAC
TAGCATTTCATTTGTTTGTTGAAGTTTGGTGTATCTTCCTTAATAGCAGTACTGCAAGTTACAC
CACGAGTTAACTTCCCAAATACTTACATTTTTGTTTTGGCAAGGTCCAATTTTAAAATTGCTTT
ATATGTTCTTTGGCCCTTTTTCTTAGATTAGATGTCTTTGATATTTTCATCATATACTAGTCAC
TTGCAGTAATCTGTTAAACTTATTTTAGTCTTTCAGTTATCTGACATTCATCTACAAATGCAGA
TACCACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTGATGA
ACTGGAATTACAAAGGCGACCTAATCCGAGAGATCACATG
						
					

			
		

Sequences
Splice junction sequence	ACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTGATGAACTG GAATTACAAAGGCGACCTAATCCGAGAGATCACATGgaagaagctcctcaaatgctggacactt taccttcattcgaagtttcccctggtctgactcatccactaggagtatcagaaattgaaagtgg aataaatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 684 Transcript exons: 3157446-3157603,3159038-3159116,3160960-3161196,3161905- 3162009,3162309-3162413 GAAGAAGCTCCTCAAATGCTGGACACTTTACCTTCATTCGAAGTTTCCCCTGGTCTGACTCATC CACTAGGAGTATCAGAAATTGAAAGTGGAATAAATTTTGCAATTTTTTCGCAGCATGCTTCTGC AGTTACACTTTGCATAATTCTTCCAAAGAGTGTTCATGATGGAATGATTGAATTAGCATTGGAT CCACAGAAGAACCGCACCGGAGACATATGGCACATATGCATTAAGGAGTTGCCCCGAGGTGGGG TCCTTTATGGTTATCGCATTGATGGACCTCGAAATTGGCATGAAGGGCATCGATTTGACGATAG CATTATTTTGATTGATCCTTACGCAAAACTAATTGAAGGTCGACGAGCTTTTGGAGATGAAAGC AATAAAATGTGTAGATTTTTTGGAACTTATGATTTCAATAGCTTGCCTTTTGACTGGGGAGAAA ATTACAAGCTTCCAAATGTACCGGAGAAAGATCTTGTTATATATGAGATGAATGTTCGTGCTTT TACTGCTGATGAAACAAGTAGTTTGGATCAAGATCAACGGGGAAGTTACCTTGGCTTAATTGAA AAGATACCACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTG ATGAACTGGAATTACAAAGGCGACCTAATCCGAGAGATCACATG
Genomic sequence	GAAGAAGCTCCTCAAATGCTGGACACTTTACCTTCATTCGAAGTTTCCCCTGGTCTGACTCATC CACTAGGAGTATCAGAAATTGAAAGTGGAATAAATTTTGCAATTTTTTCGCAGCATGCTTCTGC AGTTACACTTTGCATAATTCTTCCAAAGAGGTTAGACTCACGCTTTTGGATGGTATATTTTGTT GTCTTTAATTCTGGTCTTAGTTGCAAATTCTAGATATTAAATTCTACTACTGTTAATCCTGCCT ATTAAATTTGTTAATGTTGAGATATTATTTGATTTGCAAAATCAGAGTGATTTGATATTACTAG GATTGGTTTTGTAAATATACACCAACCAAAAATGTATACAAGGTGTAATAGTAGTAATCCCATC CAAGCTTAAGGGAACAATCAAGCTTTCCGTTTCTTCTCATTCTTTTCCCAATGTTCAATGGTAT TAGACTCAGAGGAATTCTCATATGATCTTTCCTTTCCTTCTTATCCTCCAAATCCTCTGGATGG AAAAGATAAACTTCCGTTCTGCCCAATTTAATCTGGAGGTGTAGGAGTAAGTTGAGCGTCACCT CCTATACAAGAAGTGTGACAGGGCTCGAGTGACCTTAGACCGTGAAGCTCATCACCAACAGCTT TCTTGTCCCCGTCAATGCATCGATTTGCCTCACCAGAGCTTAATCCATGTGCAGATGCGGGAGA CAGAATTCTGGCATCTCTTCTGACTGAGCTCACCTGACAGCGAGCCATATCCAGTGGTCTCCTT TTCCGATTCATCACTTGTGACTCCAAATCACCTCAAGGATCTCTGGGAAATACCCGAGGGTCTT TCCGAAGCAACCTCTCTACCTCCACAAGGTAGTGGTAAAGTCTGGATACATTCTACTCTCTTTA GACCTTCACTTGTGGAATTTCAGTGGGTATGTTGTTGTAATATGAATAATTCTAACCTAACATA GATTGGATTATGGAAAGCCAGTGGGTTAGGTTGTTTTCCATGCATACTGGGAGATAAATAGGAG AGGTTGAAGAGAGGGGTATGGGATGCCTTACATTATCTATTCCAATATATTTGAAACGGGAAGG ACAACATATGCCCTTCTTAATTCCCCCCCTGTAATTATATCAACAAGGAGGTGGGTGGGATGCC AAATGTAAGTAAAAGCTTTCTGAACAGCATAGGAACGTTTCATCTTAAATTCAACTTGTAGGTA TCGTCACATCCCTTCATCTATTGCAACATTTCATCTAAGATGGAGAAAATCTAGAAACTATGTT AATGAAATGGTGTTAAACATTCTGGTGAACCCAGCATAACCTTTTCTGCAGTAATTGACGTTGT ATCACCTTGAGATACCATTATAAATTTAGTATGTAGTAAATGTTCAAAAGATTTGTTACACTTA GGATGAAGTACCATATATTTACAAAGACTTTGGAGTATTGAACAGTTTAAAACTACCTGTTCAT TCTTCTTGCCAGGGAATAGTACTATCCCTGGTGAGCTCATGCTCATTTTTCTCATATATCATAT GCACATCTGCGTAAAGCATGTTGAGTGAATATATGTTACATGGGAATGCTTGACAGTGTTCATG ATGGAATGATTGAATTAGCATTGGATCCACAGAAGAACCGCACCGGAGACATATGGCACATATG CATTAAGGTAGTAATTTAACTATTTTATGTACCTTCATTACTGTATTCACTCAGCAATCTTCAA AGATTATATGATTTGGATGCTCATCGTATCATGTTGGCTGTCCACTTTCTACTCTCTTTTTGCT ATTAATTGACCTGCTCCCTATTGTAGGCAGTGTCAAATGATTGATCTCCTTCCTTAATGAATAC TCAAATGTGTCCATAGTTTCAATATAAAGTAAACATATTGTGGTTTTCTGTTACATTTTTAAAA GAGAAGTTAACATATTGTAGTTAGAACTGAATGTCATCCAATTGTATGTCCAATGATTATTTGA ATTTAATTTATCTTTCCTGTTATTCTGTCGAATAAAAACATTTCAAATCCTTTCTGTAGAGTCA TTGAGTTGTCCTAGTAAGTCAAATGACCTCACATATTTGGTAGGGTATCTAGCAATTCTTTGAC CTTGACCTCACATGTTTCCAACTTTTATTGAGAATATCCCAACTAAGTAAAACACATAAACTAA TGAAACTTTCTTTCCTTAAATTTCCATGCTGGAGCTGGAAGGAAGTAGTTCACTTCAGATAGAT GCATGGAATATGGATCTTGCTAATCTGAAAGGATTAAATAAAGGGATAAATTAAGATGAAAGAG AAGTAATGTAAATGTTGATTGTGTTAATTAATATGATTTTAGGAGACTTTATTTTTCCTTTCCT AGCATTATTGTAGGAACAAAATATTTTTTTTTTATTGTAAATTGATTGTCTTTCCTTAGTAAGG GTCCATTGCAAACTACCCCTTCTCTTTAAGAACCCTAATTGATTGTAGTAGACCTAGTTAGCAT ATTAGGGATGATCATGTTTAAGCATATTAGGGATGATCATGTGTACTAGCAGATTCAATTCAAG AACTTGGATGATTGCGATCTAGACCCCTAATTGAATAATTAAAGACAATAATAATACAAGACTA GTTACATTCTCCACTTAATCGAATAAGAACCATATATATCAAGCAAAGAGTTTAATATTACCTC TTAAAAAATCGTTCTTGTAAGGTTGTACAAGAAATCCTAAGTAACCAATACACGAAGATATGAA TAAATAAAATCTCAATTTTATTGATAGCTATTCTGTGTCAAAAAGAATGAAATCAACGTGGGTG AATCTAGGGTAAATTTCTAAAACACTATCCCAAATAGCACGAGATTCAATATCTACTTTATGGA AATAATAGATAATAAAACCTAACTAGGAAACTTTAAACTAGGAAAATTGAACTAGACAATTTTT AAACCAGGAAAACATGGAAGATTAATGTCACACTAATTCTAGAACTACCTAACAAAATAAGGAA AGAAGTGTCCAATTTTCTCCTGAAAATACGCCTATTCCAACAGACTTGTGCATGTATTTCAGCC TCTTTTGGGGATCCATACATGCTATTAGGTTGGCTATATGAATCTTCACTGACCATATTTCCTC ATTTATGTTTAAGCTCATGTTAATCATATACTAAAATAAATAAAAGTGAAAATAAGTCAAATTT CATTCCAATTACTTCCTTTGTATTTATTTGTTCAGATTGGACTTCTAACTCGTTCAAATGCATA ATTATCTTTAAGTTTAACATTCACTAGTATCAATTTTGTAATCACAAATTTCCTTGGATGAATC AATAGTTTCCCATATTTTTGTACTGTTGGAACTGTGTAATGAAGGTATACATTTCTCTTTTCAG CAGGCCTTTCCGTGGTTTCTATTTTACTCACAGTTTATGCTGCTATGTCACTATTATATGCTAT TATTGTGCTTGCTATATAACCTTTTCTTACTGTATTATTTTTTCTCCGTCATCCGCAGGAGTTG CCCCGAGGTGGGGTCCTTTATGGTTATCGCATTGATGGACCTCGAAATTGGCATGAAGGGCATC GATTTGACGATAGCATTATTTTGATTGATCCTTACGCAAAACTAATTGAAGGTCGACGAGCTTT TGGAGATGAAAGCAATAAAATGTGTAGATTTTTTGGAACTTATGATTTCAATAGCTTGCCTTTT GACTGGGGAGAAAATTACAAGCTTCCAAATGTACCGGAGGTAGATTGAGAAGAACTACTTGAAT AACTTTTTTCCTCGTGTGCAAATCTAAAGATAATTTGCTTGCATGTTCAGCTATTTGACTTATG AGCTATGACTAGTGACAGAGCTGTCATTTTGTAAGTGCTCAAATTGTCTGCCATTTAGTTGATC TTGTTATTTCAAGTAAGAGGAGTTTCAGCTTAATCTTCTGTAGTAATATTATTGGTTCTTTGGT AGATTGAGCTGTAAGATTATAGTACTTAGATCTTTTATAACATTTTACTCTTAAGGATAGTTCG ATTTGCATTTTACTTATGAGTGGATTATAATGTAGGGACTGCTTGTGTGGTGATTAATATGTAA CAGATTGCTATGCAGTCATTAACGATCAAGGAATTGTTGTGTAGTGATTAAGAGATTATTGCCA TACAAGAATAACCTTTTTTTAGTGACATTCTTGTCTTTGAATAGTCTAATCTCTGTATGGCTAA TACACGTATTCTTGTTTCACATTGTATCTAGTATATAATATCACATAGATTCTCGTATAACTGA AGTTGTATTATTTGGATACCACCAACCAAATGTTGCATTACATAATGCGCGATTGTGCAACCAA CCAAATGTTGTGTTATTCTATGCCCGAATATTTGCTGGATTTGTTACCACACAATCAACCAAAC CAACCATTAACTCCTTGCAGTATATCCTCTTTTCTTTGGGCAGAAAGATCTTGTTATATATGAG ATGAATGTTCGTGCTTTTACTGCTGATGAAACAAGTAGTTTGGATCAAGATCAACGGGGAAGTT ACCTTGGCTTAATTGAAAAGGTACTTCCATATTCTACTTGTCTATTTTCTCTTTTACCAACTAC TAGCATTTCATTTGTTTGTTGAAGTTTGGTGTATCTTCCTTAATAGCAGTACTGCAAGTTACAC CACGAGTTAACTTCCCAAATACTTACATTTTTGTTTTGGCAAGGTCCAATTTTAAAATTGCTTT ATATGTTCTTTGGCCCTTTTTCTTAGATTAGATGTCTTTGATATTTTCATCATATACTAGTCAC TTGCAGTAATCTGTTAAACTTATTTTAGTCTTTCAGTTATCTGACATTCATCTACAAATGCAGA TACCACATCTTCTCGAGCTTGGTGTCAATACAGTAGAATTATTGCCTGTTTTTGAGTTTGATGA ACTGGAATTACAAAGGCGACCTAATCCGAGAGATCACATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.307631851

Conservation Information
Conserved circRNAs	NA
PMCS	0.307631851

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3157462-3162410(+)
3162371-3157500(+)
						
						Potential amino acid sequence
						
							MLDTLPSFEVSPGLTHPLGVSEIESGINFAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNR
TGDIWHICIKELPRGGVLYGYRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCR
FFGTYDFNSLPFDWGENYKLPNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHL
LELGVNTVELLPVFEFDELELQRRPNPRDHMEEAPQMLDTLPSFEVSPGLTHPLGVSEIESGIN
FAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNRTGDIWHICIKELPRGGVLYGYRIDGPRN
WHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCRFFGTYDFNSLPFDWGENYKLPNVPEKDL
VIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHLLELGVNTVELLPVFEFDELELQRRPNPR
DHMEEAPQMLDTLPSFEVSPGLTHPLGVSEIESGINFAIFSQHASAVTLCIILPKSVHDGMIEL
ALDPQKNRTGDIWHICIKELPRGGVLYGYRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFG
DESNKMCRFFGTYDFNSLPFDWGENYKLPNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLG
LIEKIPHLLELGVNTVELLPVFEFDELELQRRPNPRDHMEEAPQMLDTLPSFEVSPGLTHPLGV
SEIESGINFAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNRTGDIWHICIKELPRGGVLYG
YRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCRFFGTYDFNSLPFDWGENYKL
PNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHLLELGVNTVELLPVFEFDELE
LQRRPNPRDHM(+)
MNWNYKGDLIREITWKKLLKCWTLYLHSKFPLV*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3157462-3162410(+) 3162371-3157500(+)
Potential amino acid sequence	MLDTLPSFEVSPGLTHPLGVSEIESGINFAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNR TGDIWHICIKELPRGGVLYGYRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCR FFGTYDFNSLPFDWGENYKLPNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHL LELGVNTVELLPVFEFDELELQRRPNPRDHMEEAPQMLDTLPSFEVSPGLTHPLGVSEIESGIN FAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNRTGDIWHICIKELPRGGVLYGYRIDGPRN WHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCRFFGTYDFNSLPFDWGENYKLPNVPEKDL VIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHLLELGVNTVELLPVFEFDELELQRRPNPR DHMEEAPQMLDTLPSFEVSPGLTHPLGVSEIESGINFAIFSQHASAVTLCIILPKSVHDGMIEL ALDPQKNRTGDIWHICIKELPRGGVLYGYRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFG DESNKMCRFFGTYDFNSLPFDWGENYKLPNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLG LIEKIPHLLELGVNTVELLPVFEFDELELQRRPNPRDHMEEAPQMLDTLPSFEVSPGLTHPLGV SEIESGINFAIFSQHASAVTLCIILPKSVHDGMIELALDPQKNRTGDIWHICIKELPRGGVLYG YRIDGPRNWHEGHRFDDSIILIDPYAKLIEGRRAFGDESNKMCRFFGTYDFNSLPFDWGENYKL PNVPEKDLVIYEMNVRAFTADETSSLDQDQRGSYLGLIEKIPHLLELGVNTVELLPVFEFDELE LQRRPNPRDHM(+) MNWNYKGDLIREITWKKLLKCWTLYLHSKFPLV*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Yin et al., 2018

circRNA

Detail information of Solyc06g009220.2_circ_g.2

Address

Any questions?

Supported by