Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d011454_circ_g.2 |
ID in PlantcircBase | zma_circ_009732 |
Alias | Zm08circ00059, GRMZM2G094165_C1 |
Organism | Zea mays |
Position | chr8: 150931113-150931382 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d011454 |
Parent gene annotation |
carbonic anhydrase6 |
Parent gene strand | + |
Alternative splicing | Zm00001d011454_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d011454_T001:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.208182134 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
150931117-150931379(+) 150931175-150931379(+) |
Potential amino acid sequence |
MGDAVEHLKSGFQKFKTEVYDKKPELFEPLKAGQAPKAMGDAVEHLKSGFQKFKTEVYDKKPEL FEPLKAGQAPKAMGDAVEHLKSGFQKFKTEVYDKKPELFEPLKAGQAPKAMGDAVEHLKSGFQK FKTEVYDKKPELFEPLKAGQAPK(+) MTRSRSCSSLSRPVRPPRPWATPWSTSRAGSRSSRPRCMTRSRSCSSLSRPVRPPRPWATPWST SRAGSRSSRPRCMTRSRSCSSLSRPVRPPRPWATPWSTSRAGSRSSRPRCMTRSRSCSSLSRPV RPP(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020;Zhang et al., 2019 |