Detail information of Os03g0266700_circ_g.1


General Information
CircRNA Name Os03g0266700_circ_g.1
ID in PlantcircBase osa_circ_019036
Alias NA
Organism Oryza sativa
Position chr3: 8819842-8820193  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0266700
Parent gene annotation Src homology-3 domain containing protein. (Os03t0266700-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGAACTGCTCATTTGCTGCGCATTTCTGTATATCAGATGATTTGTTCCGAAGCTTGAGTTTC
ACTTGTTCCAGTAGATGTGCTTGTTTGGTAACTAATgtacgggttcctttgcccaattccagtg
gctccgtctccccactatgccaccaccaccgatcagcgcgtggcccgatgcgcggctaaaaaac
cggaattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACGGGTTCCTTTGCCCAATTCCAGTGGCTCCGTCTCCCCACTATGCCACCACCACCGATCAG
CGCGTGGCCCGATGCGCGGCTAAAAAACCGGAATTTGGGAGTGCGGGGAGCTGCGTGGTCGGGT
TACTGGAGTTCTTGTTTGCTCCCCGCAGTTAATTCCGCATACCTAGTGGTAGGAATCAGGGTAG
GGAGTGGCGAGTGCTTGGGTTGGGATAGCAGCAGGCCAGCAGTTGGTGGAAGGAGCTGAACATG
AACTGCTCATTTGCTGCGCATTTCTGTATATCAGATGATTTGTTCCGAAGCTTGAGTTTCACTT
GTTCCAGTAGATGTGCTTGTTTGGTAACTAAT
Conservation Information
Conserved circRNAs osi_circ_014176
PMCS 0.102982955
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017