Detail information of Solyc04g051490.2_circ_g.3


General Information
CircRNA Name Solyc04g051490.2_circ_g.3
ID in PlantcircBase sly_circ_001417
Alias NA
Organism Solanum lycopersicum
Position chr4: 50615987-50620236  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc04g051490.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc04g051490.2_circ_g.1 Solyc04g051490.2_circ_g.2 Solyc04g051490.2_circ_g.4 Solyc04g051490.2_circ_g.5
Support reads 3
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc04g051490.2.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATCAGCATTAGCTTTGGTGCATCTGACTATTGGAACACTATATTTTGAAAGCTCTGATGCCG
GGGTTTCAGCAACCATAGATGGGGTCAAATCAAGACcttagatagttcctctgggacactcatt
gaccacacaatagacttttcaataggatttgatttaatttggtaggaaagacctttctccgcaa
accttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGATAGTTCCTCTGGGACACTCATTGACCACACAATAGACTTTTCAATAGGATTTGATTTA
ATTTGGTAGGAAAGACCTTTCTCCGCAAACCTTGTTAGCAAATGGCCTGACTTGGTAACATTGC
CATGTAAGACAGACGTTTATATGCAATAAAGGACGCATGGAATGGCGTGAGAAAGAAACAAGCA
GAGAAATAAAAAATCTACCTCCAATTGAACCTAGTTCCACAACTTTGGTGTCAATTTGAGCTAC
AATAGACTTTTGTGCAAACTTTCCCTTTTCCCACTTCTGCTTTTCCTTTTCTAGCTTTTTCTGC
TCAGCAGCTTCAGCCTTTTCGGCTGCCTTTTGCAATTTCTCTTGCTGAATTATGGATATACATT
AGATTACATGCCATAATTACTTAACCTCCTCCAAATAAATAGGCTTTCGTAGGAAGGCTTACCT
CTTTCTGATATCTCTTTTCTTCCTTTAGGCGAAGCTGTTCTTCCTTTGACATCCTCATTTTCCC
CGTTGCTACATCCCCGCTGCTTTTGTTACTTCTATTGCCTTTACCTCTGCCTTTTGGTTTTGAG
GCCTCCTCGTTTGGCTCCAAGGAATCATTCTCTTTGTCAGGATGATCATGGTCCTGTAAGCAAA
TTGCACCATTAAAATTAAATTTATATAGAGACAAGCCCTTTTGAGAATTTACAAAAGCTCTAGA
GTCTAGACAAAAGATACAAACATTAAGAACATGTTTTAAGCCCTATCCTCCATGCTAATTATTT
AGGCACATTTTGTGAACAGACTTGTAATCTTCAAATGCCTTTCCAATTTGACAGAATATGCACT
CAAGAGTTCTGGACATGAATCAGCTCTCCAGGATGCACAGATCTCTAATATAGATTGAAATATT
CTTACCCTTCTGATAAAATAAGAAGCCCCTAGAGGTTCAAACCATTTTAAAACAGTTTCAATAT
TCTCAATGTATGAGTAGGTTTATTAAAATGAAATGAGTGGTTCACGAACAAAACTCACACTGCT
AATTGAAGCACAACTTGAGTTCATTCATTTAGTACAAACTCAGTTTACTCAGACCATTTGACTA
AATGTTGTTCATGAGGAATTTCTTCCATATTTTCAATGGAAACAGATATATAGTTGAGCACTTA
GGGTTTCTGTTTTCCACCTCAGTTCCTCAATGCTGAACGGCTCTAAGCCATAATCTCACTACCT
TCTCTCACCTCTTTTTCAAAATTTCTCCTTTCCCTCTCCCCGTCAGTAATATTTCAAATCGGGC
TTCTCCTTCTCTTATTCTCCAGTCCAATCTAAGCCGCACCTTCGCATTGCTATGGTTGTCTGCC
AACTATTCTATTTTTCCAAAACCCTTAAACTCATTTTTGAAATCTCGCTTTACTCAGTACTTCC
TTGATTGAACTCTGAGAAATGAGATCAATTTGATAGCATGATCGAGAGTGAATTTGAGTGGAAC
TGATAAGAAACTTCGCCAAGGATTAAAAACAGTAAAGTTTGTTCTTAATTTATGCTCGACTTCA
AGTTTTTCTTGAGAATCCAGAAGCGACCAAACAGTAGTCCAAGGATAAGAGAGTAGTGCTGAAA
TTGAATAATCACAACTCTGTCCAGCTCACTTGTTCACGTTCCAATCTATAGGAGTATGTAGTTC
CACTCCCTTATTCCTGAAGCAAGTTACGAGGTATCTTATCAACTTACAGGAATAAAATCAACTT
AGTTTTAGCCATGTAGTCAGTAGTCCAGGTGTCAGAAAATCCTAAAGTTAACTGAACTTTTCTT
TTTATTGTCTCCTTCTTTTGAAGCTATCCGCGCAAATTTCACACAAACTTCTGTCAATGATGTG
TGTTTCAAGGAATGGTCCTACCGTAATGCAATGATAAAAGCTGGCTTTCTTTAAGCGGCACACA
TGCACAAGATGAGGGGTGTGGGGGAGGGTACTGAGTTACTCATATTAAGAAGAACAATGGAATG
GAATACAGAGAGCCTATTGTTATGCACACAGATAAGAAAATGTTGAAAGATAAACTTGAACCAG
GCAAACACACCACAGAAGGACCGGCTTCAGTCAAATTTCGATGAGAAAAGTCCTCTGGCATTTG
CATAAAATTGTCAATACCTGTTCAACAGTTTTTCGTCTCAGTTGAATAGCCTAACAGTTAATTT
CAGTCAATGGAAAATTTATTCTATAATCGTATTAACTAGTAGATTAAACAGAAGAGCTTACCAA
GAGAAAAGGTGGACCCGAAAAGTCTGGAGCTCCATTCTGTCTCCTTAACAACTGCCTCCGTGGA
ACAAAGTTTCTCCTCCTCCTTCCAGGCACCATGATAACCACTATTCTCAGATTCATTATCAGAC
TCCAAACAAATTACTCCATCAATTCCTGAGTTAAAACAGCCCATTGCGCAAGGAAAGGTGAAAA
CAAAACTCTGAGGCTAAAGGGCAATTTCTTTTCTTAAGTAGTAAAATAAAGTAGTATTATGCCA
AGAAAATAGGAAAACCAGAATATACCACCAAATGAGAAGAATAAGCAAGCATGTCAAAGCTAGG
TTGTCATTTGCTTGTTTGTTCATATAAACCTAGATTGATAAACCCATGTACCCATTATCTTTGG
GTTAACAAATAGTATAAGGACTAAAAATATCTCTTTAACCATCCCTTTTTTGCATCAGAGAAAA
ACGTAATGAGGAGTATGCCTAACTAGCGCAAAGTATTACGGCTGATCTCGAACGAGGCACAGGA
AGAGCAAACAAAACAAGTGAACCATGTTGAACTAATACTAGAATCTGCCTTTGCAGAAAATAAC
TGATTAATCAAACACAACTCATAAAAGCAGGCAGGGTGATGCAGCACGAAGAGCAAACAAAACA
TCCACTCATCCAGGTTATAAAGAGTATTACAGAAGTATCCAAGTAGTAGTTCAACATGATGTAT
GTCCAGGGGAAAGGAAAACGACTAAAAGAGCAGCCAAGTGAGCGAAGCATCCCGCTTTCACACA
GGGATCAAGGAAGGACCGCAGCCCAAGAGGGAGTAATGTAGGCAGCCTACCCTGATGCCAGTAT
CTGACTCCACAGCTCGAACCGTAACCTATACTTCACACTGACACAACTTTACTGTTGCCCAAGG
CTTTCATTCGGAAAGGCAGACGCACTGAGCAGAGAAAATGGGTTTGATTACTGAAAGCAAAATG
TAACCGGAATATGGTGCACTAATTTTCTGGCGCATTCTAGTAACAGACCAAAGATATTGTAAAT
GCACTTCATGTTCTTTGTGCAGTTAACTAGTAAAGTTAAGGAAGCAAAATCATGTAAGAATCAC
TAAAGAAAGGCCTGGAATGATTCATTTAAATACTTATATGAAAGCTTAAGCTTCAACTTGCTGT
TGTACCGTCTAGAAGGCAAAGCAACCGTAATCGCATGCTAGATCAACAATAGCAACATTCAAAC
TTCTGGAGATGAGTGATGATGATGGCAAAGCAATTAATTTATTCTAAAAACAATGATCATCAAA
TAAAGAATATGTGTCAGGAAATTGAAGTACCGACCTATAATGTTAAATAATGACAGAAGGACTA
AATAATAGATAAATACTATTCCCTCTGTTTGAATATATGTTTGTGCGCCCCACTGCTTTTCTAT
TGTTGTGATGTTCTTCTTCAATGTCATTTTTTTTCTTTCTATTACTACTTTGATTTGCTTCACT
TGAGCCAAGGGTCTTTCCTAAACAGTCTCTCTACCCCCAAGAGATACATATAAGGTTTGTTTAC
ACTCTACACTCCTCCTTAGACCCCACTTTGTGGGATTCCACTGGGTATGTTGTTGTTTTTGTTG
TACTATTCCCTCCATCCCAATTTATATTAAGGTGTTTGTTTAGGCACGAGTTCAAGAGAAAAAG
AAAGAATTTTAAACTTGTGGCCTAAAACAAGTCATCATAAATTATGGGCTATAAATCATCTCAT
TAAGGATAAAATGAGAAATTTGAAGTTGAATTGCTTTTAGATATAGAAAGATGTCATTTTTTAC
ATAATAATAACTATGATGTCTCAGAACTTGACATTTGGTTAAAAACTATAAACTAGGCCAGTTT
AAAGGCTTACCGTCATCTTTGTTGTGGTCTATAATTGAAGAAGAGCAATTCTTTGAATCAGCAT
TAGCTTTGGTGCATCTGACTATTGGAACACTATATTTTGAAAGCTCTGATGCCGGGGTTTCAGC
AACCATAGATGGGGTCAAATCAAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.132342065
Functional Information
Coding potential Y
Potential coding position 50620218-50620227(-)
Potential amino acid sequence MVAETPASELSKYSVPIVRCTKANADSKNCSSSIIDHNKDDGIDGVICLESDNESENSGYHGAW
KEEEKLCSTEAVVKETEWSSRLFGSTFSLGIDNFMQMPEDFSHRNLTEAGPSVDHDHPDKENDS
LEPNEEASKPKGRGKGNRSNKSSGDVATGKMRMSKEEQLRLKEEKRYQKEQEKLQKAAEKAEAA
EQKKLEKEKQKWEKGKFAQKSIVAQIDTKVVELGSIGGHLLTRFAEKGLSYQIKSNPIEKSIVW
SMSVPEELSKVLI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016