Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d021297_circ_g.1 |
ID in PlantcircBase | zma_circ_009402 |
Alias | zma_circ_0002588 |
Organism | Zea mays |
Position | chr7: 148167567-148174795 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d021297 |
Parent gene annotation |
Pantothenate kinase 2 |
Parent gene strand | + |
Alternative splicing | Zm00001d021297_circ_g.2 Zm00001d021297_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d021297_T014:13 Zm00001d021297_T001:17 Zm00001d021297_T011:16 Zm00001d021297_T003:16 Zm00001d021297_T006:17 Zm00001d021297_T009:17 Zm00001d021297_T016:5 Zm00001d021297_T002:16 Zm00001d021297_T015:10 Zm00001d021297_T004:16 Zm00001d021297_T013:16 Zm00001d021297_T008:17 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.106768221 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
148167657-148167575(+) 148167603-148173883(-) |
Potential amino acid sequence |
MFNGGRRSYPILGGRLHFVKFETGKLNECLDFISSKQLHRGGIDSPSWRSGAQSDDIVIKATGG GAFKYADVFKERLGVSLEKEDEMDCLVAGANFLLKAIRHEAFTHMDGQKQYVQIDQNDLFPFLL VNVGSGVSIIKVDGHGKFQRVSGTNVGGGTYWGLGRLMTKCKSFDELLELSQRGDNSTMDMLVG DIYGGLDYSKIGLSASTIASSFGKIISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRYG LKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLRIS WMEKFVQKGTQIIAPVPMGVPATTGMGGFERPTAKGDILRSDASAALNVGVLHLVPTLDVFPLL EDPKTYEPNTIDLDQDEFKYWFKILSDHSPDLVDKAVASEGGTDDAKRRGDAFAHAFSAHLARL MEEPAAYGKFGLANLLELREECLREFQFVDAYISIKQRENEASLAVLPDLLMELDSMNEIDDFD MFKKRMLTDRKDQSYKRALLFVDNSGADVVLGMLPLARELLRHGTEDLL*(+) MSREVHQFYKRSSVPWRKSSLAKGSIPRTTSAPELSTKSSALLYDWSFLSVSILFLNMSKSSIS FILSSSIRRSGKTASEASFSLCLMLIYASTN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |