Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14910_circ_g.4 |
ID in PlantcircBase | ath_circ_002613 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5141172-5141696 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, CIRI-full |
Parent gene | AT1G14910 |
Parent gene annotation |
Putative clathrin assembly protein At1g14910 |
Parent gene strand | - |
Alternative splicing | AT1G14910_circ_g.1 AT1G14910_circ_g.2 AT1G14910_circ_g.3 AT1G14910_circ_g.5 AT1G14910_circ_g.6 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14910.2:3 AT1G14910.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.272798857 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5141502-5141174(-) |
Potential amino acid sequence |
MEEYMRDAPQMVDVTSGPLLLTYTPDDGLTSEDVGPSHEEHETSSPSDSAVVPSEETQLSSQSP PSVETPQNFIDTDDLLAGNLSAFYEVCKGLELARNFQFPVLREPPQSFLTTMEEYMRDAPQMVD VTSGPLLLTYTPDDGLTSEDVGPSHEEHETSSPSDSAVVPSEETQLSSQSPPSVETPQNFIDTD DLLAGNLSAFYEVCKGLELARNFQFPVLREPPQSFLTTMEEYMRDAPQMVDVTSGPLLLTYTPD DGLTSEDVGPSHEEHETSSPSDSAVVPSEETQLSSQSPPSVETPQNFIDTDDLLAGNLSAFYEV CKGLELARNFQFPVLREPPQSFLTTMEEYMRDAPQMVDVTSGPLLLTYTPDDGLTSEDVGPSHE EHETSSPSDSAVVPSEETQLSSQSPPSVETPQNFIDTDDLL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |