Detail information of BGIOSGA032658_circ_ig.1


General Information
CircRNA Name BGIOSGA032658_circ_ig.1
ID in PlantcircBase osi_circ_008840
Alias Chr10:8020060_8020511(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5996304-5996755  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032658_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAGGAACTCCATGTACGCGTCCTTGTCATGGTCCGCTGGATCAAGAACTACGATGGTTTGGT
CCGTTGGATAGACGAAGAATAGTATGTAGTGTTCGCatatgtaaactcagttctgtatctccca
ttgaccctgagcatctcgcacacgtaataaccgcataggtttgtcaagctaggttgcttataac
actgcata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATGTAAACTCAGTTCTGTATCTCCCATTGACCCTGAGCATCTCGCACACGTAATAACCGCAT
AGGTTTGTCAAGCTAGGTTGCTTATAACACTGCATACATAAGTGGACACGTCAGAAATAAGAAG
TGACAATCGTGATGTACGTACCAAATAAATGCTGACATACCGGCCAGTGTCCCCTTATGTACAA
TTTCTCTCTACTTGGATTCTTTACGTACCCGCCATGTTTCTTATAACGGCCGTGTGCTCTACAA
AAATAAATTAATTACTTATGATAAATCTACTTTAATGATCTTTACGGAAAGTTGGAATCTTTAC
GAAAATTGTTTCGAACTTACAAGTTCAGCAAGCATAGGAACTCCATGTACGCGTCCTTGTCATG
GTCCGCTGGATCAAGAACTACGATGGTTTGGTCCGTTGGATAGACGAAGAATAGTATGTAGTGT
TCGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021